2cf4: Difference between revisions

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-==PYROCOCCUS HORIKOSHII TET1 PEPTIDASE CAN ASSEMBLE INTO A TETRAHEDRON OR A LARGE OCTAHEDRAL SHELL==
-<StructureSection load='2cf4' size='340' side='right' caption='[[2cf4]], [[Resolution|resolution]] 3.08&Aring;' scene=''>
+==Pyrococcus horikoshii TET1 peptidase can assemble into a tetrahedron or a large octahedral shell==
+<StructureSection load='2cf4' size='340' side='right'caption='[[2cf4]], [[Resolution|resolution]] 3.08&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[2cf4]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CF4 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2CF4 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[2cf4]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii_OT3 Pyrococcus horikoshii OT3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CF4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2CF4 FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.08&#8491;</td></tr>
-<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2cf4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cf4 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2cf4 RCSB], [http://www.ebi.ac.uk/pdbsum/2cf4 PDBsum]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2cf4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cf4 OCA], [https://pdbe.org/2cf4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2cf4 RCSB], [https://www.ebi.ac.uk/pdbsum/2cf4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2cf4 ProSAT]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/O58255_PYRHO O58255_PYRHO]
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cf/2cf4_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cf/2cf4_consurf.spt"</scriptWhenChecked>
-     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2cf4 ConSurf].
 <div style="clear:both"></div>
 <div style="background-color:#fffaf0;">
@@ Line 25: / Line 28: @@
 From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 </div>
+<div class="pdbe-citations 2cf4" style="background-color:#fffaf0;"></div>
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Pyrococcus horikoshii]]
+[[Category: Large Structures]]
-[[Category: Dura, M A]]
+[[Category: Pyrococcus horikoshii OT3]]
-[[Category: Franzetti, B]]
+[[Category: Dura MA]]
-[[Category: Roussel, A]]
+[[Category: Franzetti B]]
-[[Category: Schoehn, G]]
+[[Category: Roussel A]]
-[[Category: Vellieux, F M.D]]
+[[Category: Schoehn G]]
-[[Category: Aminopeptidase]]
+[[Category: Vellieux FMD]]
-[[Category: Archaea]]
-[[Category: Hydrolase]]
-[[Category: Hyperthermophile]]
-[[Category: Metalloprotein]]
-[[Category: Tetrahedral]]