4m5k: Difference between revisions

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 ==The Identification, Analysis and Structure-Based Development of Novel Inhibitors of 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase==
-<StructureSection load='4m5k' size='340' side='right' caption='[[4m5k]], [[Resolution|resolution]] 1.30&Aring;' scene=''>
+<StructureSection load='4m5k' size='340' side='right'caption='[[4m5k]], [[Resolution|resolution]] 1.30&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[4m5k]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Ecoli Ecoli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4M5K OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4M5K FirstGlance]. <br>
+<table><tr><td colspan='2'>[[4m5k]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4M5K OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4M5K FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=APC:DIPHOSPHOMETHYLPHOSPHONIC+ACID+ADENOSYL+ESTER'>APC</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=YH3:2-AMINO-8-{[2-(3-METHYLPHENYL)-2-OXOETHYL]SULFANYL}-1,9-DIHYDRO-6H-PURIN-6-ONE'>YH3</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.296&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1q0n|1q0n]], [[1hka|1hka]], [[1kbr|1kbr]], [[4m5g|4m5g]], [[4m5h|4m5h]], [[4m5i|4m5i]], [[4m5j|4m5j]], [[4m5l|4m5l]], [[4m5m|4m5m]], [[4m5n|4m5n]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=APC:DIPHOSPHOMETHYLPHOSPHONIC+ACID+ADENOSYL+ESTER'>APC</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=YH3:2-AMINO-8-{[2-(3-METHYLPHENYL)-2-OXOETHYL]SULFANYL}-1,9-DIHYDRO-6H-PURIN-6-ONE'>YH3</scene></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">folK, b0142, JW0138 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 ECOLI])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4m5k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4m5k OCA], [https://pdbe.org/4m5k PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4m5k RCSB], [https://www.ebi.ac.uk/pdbsum/4m5k PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4m5k ProSAT]</span></td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/2-amino-4-hydroxy-6-hydroxymethyldihydropteridine_diphosphokinase 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.6.3 2.7.6.3] </span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4m5k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4m5k OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4m5k RCSB], [http://www.ebi.ac.uk/pdbsum/4m5k PDBsum]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/HPPK_ECOLI HPPK_ECOLI]
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 17: / Line 18: @@
 From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 </div>
+<div class="pdbe-citations 4m5k" style="background-color:#fffaf0;"></div>
 ==See Also==
-*[[6-hydroxymethyl-7%2C8-dihydropterin pyrophosphokinase|6-hydroxymethyl-7%2C8-dihydropterin pyrophosphokinase]]
+*[[HPPK 3D structures|HPPK 3D structures]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase]]
+[[Category: Escherichia coli K-12]]
-[[Category: Ecoli]]
+[[Category: Large Structures]]
-[[Category: Hoagland, D]]
+[[Category: Hoagland D]]
-[[Category: Kumar, G]]
+[[Category: Kumar G]]
-[[Category: Lee, R E]]
+[[Category: Lee RE]]
-[[Category: Rock, C O]]
+[[Category: Rock CO]]
-[[Category: Waddell, B]]
+[[Category: Waddell B]]
-[[Category: White, S W]]
+[[Category: White SW]]
-[[Category: Yun, M]]
+[[Category: Yun M]]
-[[Category: Atp binding]]
-[[Category: Diphosphotransferase]]
-[[Category: Folate biosynthesis]]
-[[Category: Inhibitor]]
-[[Category: Pterin]]
-[[Category: Transferase-transferase inhibitor complex]]