3v7p: Difference between revisions

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 ==Crystal structure of amidohydrolase nis_0429 (target efi-500396) from Nitratiruptor sp. sb155-2==
-<StructureSection load='3v7p' size='340' side='right' caption='[[3v7p]], [[Resolution|resolution]] 1.35&Aring;' scene=''>
+<StructureSection load='3v7p' size='340' side='right'caption='[[3v7p]], [[Resolution|resolution]] 1.35&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[3v7p]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Nitratiruptor_sp._sb155-2 Nitratiruptor sp. sb155-2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3V7P OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3V7P FirstGlance]. <br>
+<table><tr><td colspan='2'>[[3v7p]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Nitratiruptor_sp._SB155-2 Nitratiruptor sp. SB155-2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3V7P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3V7P FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BCT:BICARBONATE+ION'>BCT</scene>, <scene name='pdbligand=BEZ:BENZOIC+ACID'>BEZ</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=TLA:L(+)-TARTARIC+ACID'>TLA</scene>, <scene name='pdbligand=UNL:UNKNOWN+LIGAND'>UNL</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.35&#8491;</td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">NIS_0429 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=387092 Nitratiruptor sp. SB155-2])</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BCT:BICARBONATE+ION'>BCT</scene>, <scene name='pdbligand=BEZ:BENZOIC+ACID'>BEZ</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=TLA:L(+)-TARTARIC+ACID'>TLA</scene></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3v7p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3v7p OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3v7p RCSB], [http://www.ebi.ac.uk/pdbsum/3v7p PDBsum]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3v7p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3v7p OCA], [https://pdbe.org/3v7p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3v7p RCSB], [https://www.ebi.ac.uk/pdbsum/3v7p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3v7p ProSAT]</span></td></tr>
 </table>
-== Function ==
-[[http://www.uniprot.org/uniprot/A6Q234_NITSB A6Q234_NITSB]] Catalyzes the deamination of aminodeoxyfutalosine (AFL) into futalosine (FL), a step in the biosynthesis of menaquinone (MK, vitamin K2). To a lesser extent, can also deaminate 5'-methylthioadenosine.<ref>PMID:23972005</ref>
-== References ==
-<references/>
 __TOC__
 </StructureSection>
-[[Category: Nitratiruptor sp. sb155-2]]
+[[Category: Large Structures]]
-[[Category: Almo, S C]]
+[[Category: Nitratiruptor sp. SB155-2]]
-[[Category: Bhosle, R]]
+[[Category: Almo SC]]
-[[Category: Chowdhury, S]]
+[[Category: Bhosle R]]
-[[Category: Evans, B]]
+[[Category: Chowdhury S]]
-[[Category: Gerlt, J A]]
+[[Category: Evans B]]
-[[Category: Glenn, A Scott]]
+[[Category: Gerlt JA]]
-[[Category: Hammonds, J]]
+[[Category: Hammonds J]]
-[[Category: Hillerich, B]]
+[[Category: Hillerich B]]
-[[Category: Imker, H J]]
+[[Category: Imker HJ]]
-[[Category: Initiative, EfiEnzyme Function]]
+[[Category: Patskovsky Y]]
-[[Category: Patskovsky, Y]]
+[[Category: Raushel FM]]
-[[Category: Raushel, F M]]
+[[Category: Scott Glenn A]]
-[[Category: Seidel, R D]]
+[[Category: Seidel RD]]
-[[Category: Toro, R]]
+[[Category: Toro R]]
-[[Category: Washington, E]]
+[[Category: Washington E]]
-[[Category: Zencheck, W D]]
+[[Category: Zencheck WD]]
-[[Category: Amidohydrolase]]
-[[Category: Efi]]
-[[Category: Enzyme function initiative]]
-[[Category: Hydrolase]]
-[[Category: Iron binding site]]