2jty: Difference between revisions

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OCA

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 ==Self-complemented variant of FimA, the main subunit of type 1 pilus==
-<StructureSection load='2jty' size='340' side='right' caption='[[2jty]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''>
+<StructureSection load='2jty' size='340' side='right'caption='[[2jty]]' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[2jty]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JTY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2JTY FirstGlance]. <br>
+<table><tr><td colspan='2'>[[2jty]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JTY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JTY FirstGlance]. <br>
-</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">fimA, pilA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])</td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR, 20 models</td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jty FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jty OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2jty RCSB], [http://www.ebi.ac.uk/pdbsum/2jty PDBsum]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2jty FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jty OCA], [https://pdbe.org/2jty PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2jty RCSB], [https://www.ebi.ac.uk/pdbsum/2jty PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2jty ProSAT]</span></td></tr>
 </table>
-== Function ==
-[[http://www.uniprot.org/uniprot/FIMA1_ECOLI FIMA1_ECOLI]] Fimbriae (also called pili), polar filaments radiating from the surface of the bacterium to a length of 0.5-1.5 micrometers and numbering 100-300 per cell, enable bacteria to colonize the epithelium of specific host organs.
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jt/2jty_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jt/2jty_consurf.spt"</scriptWhenChecked>
-     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2jty ConSurf].
 <div style="clear:both"></div>
 <div style="background-color:#fffaf0;">
@@ Line 26: / Line 25: @@
 From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 </div>
+<div class="pdbe-citations 2jty" style="background-color:#fffaf0;"></div>
 ==See Also==
-*[[Pilin|Pilin]]
+*[[Pilin 3D structures|Pilin 3D structures]]
 == References ==
 <references/>
@@ Line 34: / Line 34: @@
 </StructureSection>
 [[Category: Escherichia coli]]
-[[Category: Erilov, D]]
+[[Category: Large Structures]]
-[[Category: Glockshuber, R]]
+[[Category: Erilov D]]
-[[Category: Puorger, C]]
+[[Category: Glockshuber R]]
-[[Category: Vetsch, M]]
+[[Category: Puorger C]]
-[[Category: Wider, G]]
+[[Category: Vetsch M]]
-[[Category: Cell projection]]
+[[Category: Wider G]]
-[[Category: Chaperone]]
-[[Category: Chimera]]
-[[Category: Fimbrium]]
-[[Category: Protein/pili/fim]]
-[[Category: Structural protein]]