4mlq: Difference between revisions

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 ==Crystal structure of Bacillus megaterium porphobilinogen deaminase==
-<StructureSection load='4mlq' size='340' side='right' caption='[[4mlq]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
+<StructureSection load='4mlq' size='340' side='right'caption='[[4mlq]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[4mlq]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_14581 Atcc 14581]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4MLQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4MLQ FirstGlance]. <br>
+<table><tr><td colspan='2'>[[4mlq]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Priestia_megaterium Priestia megaterium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4MLQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4MLQ FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=29P:3-[(5S)-5-{[3-(2-CARBOXYETHYL)-4-(CARBOXYMETHYL)-5-METHYL-1H-PYRROL-2-YL]METHYL}-4-(CARBOXYMETHYL)-2-OXO-2,5-DIHYDRO-1H-PYRROL-3-YL]PROPANOIC+ACID'>29P</scene>, <scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=DPM:3-[5-{[3-(2-CARBOXYETHYL)-4-(CARBOXYMETHYL)-5-METHYL-1H-PYRROL-2-YL]METHYL}-4-(CARBOXYMETHYL)-1H-PYRROL-3-YL]PROPANOIC+ACID'>DPM</scene></td></tr>
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=29P:3-[(5S)-5-{[3-(2-CARBOXYETHYL)-4-(CARBOXYMETHYL)-5-METHYL-1H-PYRROL-2-YL]METHYL}-4-(CARBOXYMETHYL)-2-OXO-2,5-DIHYDRO-1H-PYRROL-3-YL]PROPANOIC+ACID'>29P</scene>, <scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=DPM:3-[5-{[3-(2-CARBOXYETHYL)-4-(CARBOXYMETHYL)-5-METHYL-1H-PYRROL-2-YL]METHYL}-4-(CARBOXYMETHYL)-1H-PYRROL-3-YL]PROPANOIC+ACID'>DPM</scene></td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1pda|1pda]], [[4htg|4htg]]</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4mlq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4mlq OCA], [https://pdbe.org/4mlq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4mlq RCSB], [https://www.ebi.ac.uk/pdbsum/4mlq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4mlq ProSAT]</span></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">hemC ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1404 ATCC 14581])</td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Hydroxymethylbilane_synthase Hydroxymethylbilane synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.5.1.61 2.5.1.61] </span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4mlq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4mlq OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4mlq RCSB], [http://www.ebi.ac.uk/pdbsum/4mlq PDBsum]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/Q8GCA8_BACME Q8GCA8_BACME]] Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps (By similarity).[HAMAP-Rule:MF_00260][SAAS:SAAS022418_004_010364]
+[https://www.uniprot.org/uniprot/Q8GCA8_PRIMG Q8GCA8_PRIMG] Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps.[ARBA:ARBA00002869][HAMAP-Rule:MF_00260]
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 19: / Line 17: @@
 From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 </div>
+<div class="pdbe-citations 4mlq" style="background-color:#fffaf0;"></div>
 ==See Also==
@@ Line 26: / Line 25: @@
 __TOC__
 </StructureSection>
-[[Category: Atcc 14581]]
+[[Category: Large Structures]]
-[[Category: Hydroxymethylbilane synthase]]
+[[Category: Priestia megaterium]]
-[[Category: Akhtar, M]]
+[[Category: Akhtar M]]
-[[Category: Azim, N]]
+[[Category: Azim N]]
-[[Category: Coker, A]]
+[[Category: Coker A]]
-[[Category: Cooper, J B]]
+[[Category: Cooper JB]]
-[[Category: Deery, E]]
+[[Category: Deery E]]
-[[Category: Erskine, P]]
+[[Category: Erskine P]]
-[[Category: Warren, M J]]
+[[Category: Warren MJ]]
-[[Category: Wood, S P]]
+[[Category: Wood SP]]
-[[Category: Dipyrromethane cofactor]]
-[[Category: Domains 1 and 2 resemble the fold of type ii periplasmic binding protein]]
-[[Category: Porphobilinogen deaminase]]
-[[Category: Pyrrole polymerisation]]
-[[Category: Tetrapyrrole biosynthesis]]
-[[Category: Three-domain fold]]
-[[Category: Transferase]]