2okq: Difference between revisions

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 ==Crystal structure of unknown conserved ybaA protein from Shigella flexneri==
-<StructureSection load='2okq' size='340' side='right' caption='[[2okq]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
+<StructureSection load='2okq' size='340' side='right'caption='[[2okq]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[2okq]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Shigella_flexneri Shigella flexneri]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OKQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2OKQ FirstGlance]. <br>
+<table><tr><td colspan='2'>[[2okq]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Shigella_flexneri Shigella flexneri]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OKQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OKQ FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ybaA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=623 Shigella flexneri])</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2okq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2okq OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2okq RCSB], [http://www.ebi.ac.uk/pdbsum/2okq PDBsum], [http://www.topsan.org/Proteins/MCSG/2okq TOPSAN]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2okq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2okq OCA], [https://pdbe.org/2okq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2okq RCSB], [https://www.ebi.ac.uk/pdbsum/2okq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2okq ProSAT], [https://www.topsan.org/Proteins/MCSG/2okq TOPSAN]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/YBAA_SHIFL YBAA_SHIFL]
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ok/2okq_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ok/2okq_consurf.spt"</scriptWhenChecked>
      <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2okq ConSurf].
 <div style="clear:both"></div>
 __TOC__
 </StructureSection>
+[[Category: Large Structures]]
 [[Category: Shigella flexneri]]
-[[Category: Anderson, W F]]
+[[Category: Anderson WF]]
-[[Category: Brunzelle, J S]]
+[[Category: Brunzelle JS]]
-[[Category: Collart, F R]]
+[[Category: Collart FR]]
-[[Category: Joachimiak, A]]
+[[Category: Joachimiak A]]
-[[Category: Kiryukhina, O]]
+[[Category: Kiryukhina O]]
-[[Category: Structural genomic]]
+[[Category: Minasov G]]
-[[Category: Minasov, G]]
+[[Category: Shuvalova L]]
-[[Category: Shuvalova, L]]
+[[Category: Vorontsov II]]
-[[Category: Vorontsov, I I]]
-[[Category: Mcsg]]
-[[Category: PSI, Protein structure initiative]]
-[[Category: Unknown function]]
-[[Category: Ybaa protein]]