2vy1: Difference between revisions

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 ==Structure of LEAFY transcription factor from Arabidopsis thaliana in complex with DNA from AP1 promoter==
-<StructureSection load='2vy1' size='340' side='right' caption='[[2vy1]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
+<StructureSection load='2vy1' size='340' side='right'caption='[[2vy1]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[2vy1]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VY1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VY1 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[2vy1]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VY1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VY1 FirstGlance]. <br>
-</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2vy2|2vy2]]</td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.104&#8491;</td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vy1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vy1 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vy1 RCSB], [http://www.ebi.ac.uk/pdbsum/2vy1 PDBsum]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vy1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vy1 OCA], [https://pdbe.org/2vy1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vy1 RCSB], [https://www.ebi.ac.uk/pdbsum/2vy1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vy1 ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/LFY_ARATH LFY_ARATH]] Probable transcription factor that promotes early floral meristem identity in synergy with APETALA1. Is required subsequently for the transition of an inflorescence meristem into a floral meristem, by an immediate upstream regulation of the ABC classes of floral homeotic genes. Activates directly APETALA1, CAULIFLOWER and AGAMOUS, and indirectly APETALA3 and PISTILLATA with the cooperation of UFO.[REFERENCE:6]<ref>PMID:8565821</ref> <ref>PMID:9783581</ref>
+[https://www.uniprot.org/uniprot/LFY_ARATH LFY_ARATH] Probable transcription factor that promotes early floral meristem identity in synergy with APETALA1. Is required subsequently for the transition of an inflorescence meristem into a floral meristem, by an immediate upstream regulation of the ABC classes of floral homeotic genes. Activates directly APETALA1, CAULIFLOWER and AGAMOUS, and indirectly APETALA3 and PISTILLATA with the cooperation of UFO.[REFERENCE:6]<ref>PMID:8565821</ref> <ref>PMID:9783581</ref>
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vy/2vy1_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vy/2vy1_consurf.spt"</scriptWhenChecked>
      <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2vy1 ConSurf].
 <div style="clear:both"></div>
 <div style="background-color:#fffaf0;">
@@ Line 26: / Line 27: @@
 From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 </div>
+<div class="pdbe-citations 2vy1" style="background-color:#fffaf0;"></div>
 == References ==
 <references/>
@@ Line 31: / Line 33: @@
 </StructureSection>
 [[Category: Arabidopsis thaliana]]
-[[Category: Benlloch, R]]
+[[Category: Large Structures]]
-[[Category: Gerard, F]]
+[[Category: Benlloch R]]
-[[Category: Grimm, C]]
+[[Category: Gerard F]]
-[[Category: Hames, C]]
+[[Category: Grimm C]]
-[[Category: Martiel, J L]]
+[[Category: Hames C]]
-[[Category: Moyroud, E]]
+[[Category: Martiel JL]]
-[[Category: Muller, C W]]
+[[Category: Moyroud E]]
-[[Category: Parcy, F]]
+[[Category: Muller CW]]
-[[Category: Ptchelkine, D]]
+[[Category: Parcy F]]
-[[Category: Thevenon, E]]
+[[Category: Ptchelkine D]]
-[[Category: Activator]]
+[[Category: Thevenon E]]
-[[Category: Developmental protein]]
-[[Category: Differentiation]]
-[[Category: Dna-binding]]
-[[Category: Flower development]]
-[[Category: Flowering]]
-[[Category: Homeotic gene]]
-[[Category: Nucleus]]
-[[Category: Transcription]]
-[[Category: Transcription regulation]]