2ebj: Difference between revisions

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-[[Image:2ebj.jpg|left|200px]]
- {{Structure
+==Crystal structure of pyrrolidone carboxyl peptidase from Thermus thermophilus==
-|PDB= 2ebj |SIZE=350|CAPTION= <scene name='initialview01'>2ebj</scene>, resolution 1.90&Aring;
+<StructureSection load='2ebj' size='340' side='right'caption='[[2ebj]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
-|SITE=
+== Structural highlights ==
-|LIGAND=
+<table><tr><td colspan='2'>[[2ebj]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EBJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2EBJ FirstGlance]. <br>
-|ACTIVITY= [http://en.wikipedia.org/wiki/Pyroglutamyl-peptidase_I Pyroglutamyl-peptidase I], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.19.3 3.4.19.3]
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-|GENE= TTHA0888 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=274 Thermus thermophilus])
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ebj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ebj OCA], [https://pdbe.org/2ebj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ebj RCSB], [https://www.ebi.ac.uk/pdbsum/2ebj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ebj ProSAT], [https://www.topsan.org/Proteins/RSGI/2ebj TOPSAN]</span></td></tr>
-}}
+</table>
+== Function ==
-'''Crystal structure of pyrrolidone carboxyl peptidase from Thermus thermophilus'''
+[https://www.uniprot.org/uniprot/Q5SJW4_THET8 Q5SJW4_THET8] Removes 5-oxoproline from various penultimate amino acid residues except L-proline (By similarity).[SAAS:SAAS016125_004_005679]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
-==About this Structure==
+Check<jmol>
-EBJ is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EBJ OCA].
+  <jmolCheckbox>
-[[Category: Pyroglutamyl-peptidase I]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/eb/2ebj_consurf.spt"</scriptWhenChecked>
-[[Category: Single protein]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-[[Category: Thermus thermophilus]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: Agari, Y.]]
+  </jmolCheckbox>
-[[Category: Karthe, P.]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ebj ConSurf].
-[[Category: Kumarevel, T S.]]
+<div style="clear:both"></div>
-[[Category: Kuramitsu, S.]]
+__TOC__
-[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+</StructureSection>
-[[Category: Yokoyama, S.]]
+[[Category: Large Structures]]
-[[Category: degradation of proteins and peptide]]
+[[Category: Thermus thermophilus HB8]]
-[[Category: hydrolase]]
+[[Category: Agari Y]]
-[[Category: national project on protein structural and functional analyse]]
+[[Category: Karthe P]]
-[[Category: nppsfa]]
+[[Category: Kumarevel TS]]
-[[Category: pyrrolidone carboxyl peptidase]]
+[[Category: Kuramitsu S]]
-[[Category: riken structural genomics/proteomics initiative]]
+[[Category: Yokoyama S]]
-[[Category: rsgi]]
-[[Category: structural genomic]]
-[[Category: thermus thermophilus]]
-[[Category: ttha0888]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 16:37:52 2008''