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[[Image:2dby.gif|left|200px]]


{{Structure
==Crystal structure of the GTP-binding protein YchF in complexed with GDP==
|PDB= 2dby |SIZE=350|CAPTION= <scene name='initialview01'>2dby</scene>, resolution 1.76&Aring;
<StructureSection load='2dby' size='340' side='right'caption='[[2dby]], [[Resolution|resolution]] 1.76&Aring;' scene=''>
|SITE=  
== Structural highlights ==
|LIGAND= <scene name='pdbligand=GDP:GUANOSINE-5'-DIPHOSPHATE'>GDP</scene> and <scene name='pdbligand=FMT:FORMIC ACID'>FMT</scene>
<table><tr><td colspan='2'>[[2dby]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DBY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DBY FirstGlance]. <br>
|ACTIVITY=  
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.76&#8491;</td></tr>
|GENE=  
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
}}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dby FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dby OCA], [https://pdbe.org/2dby PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dby RCSB], [https://www.ebi.ac.uk/pdbsum/2dby PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dby ProSAT], [https://www.topsan.org/Proteins/RSGI/2dby TOPSAN]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/Q5SJ29_THET8 Q5SJ29_THET8] ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.[HAMAP-Rule:MF_00944]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/db/2dby_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dby ConSurf].
<div style="clear:both"></div>


'''Crystal structure of the GTP-binding protein YchF in complexed with GDP'''
==See Also==
 
*[[GTP-binding protein 3D structures|GTP-binding protein 3D structures]]
 
__TOC__
==About this Structure==
</StructureSection>
2DBY is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DBY OCA].
[[Category: Large Structures]]
[[Category: Single protein]]
[[Category: Thermus thermophilus HB8]]
[[Category: Thermus thermophilus]]
[[Category: Kukimoto-Niino M]]
[[Category: Kukimoto-Niino, M.]]
[[Category: Kuramitsu S]]
[[Category: Kuramitsu, S.]]
[[Category: Murayama K]]
[[Category: Murayama, K.]]
[[Category: Shirouzu M]]
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
[[Category: Yokoyama S]]
[[Category: Shirouzu, M.]]
[[Category: Yokoyama, S.]]
[[Category: FMT]]
[[Category: GDP]]
[[Category: gdp]]
[[Category: gtp-binding protein]]
[[Category: national project on protein structural and functional analyse]]
[[Category: nppsfa]]
[[Category: riken structural genomics/proteomics initiative]]
[[Category: rsgi]]
[[Category: structural genomic]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 16:25:29 2008''

Latest revision as of 14:37, 22 May 2024

Crystal structure of the GTP-binding protein YchF in complexed with GDPCrystal structure of the GTP-binding protein YchF in complexed with GDP

Structural highlights

2dby is a 1 chain structure with sequence from Thermus thermophilus HB8. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.76Å
Ligands:, ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

Q5SJ29_THET8 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.[HAMAP-Rule:MF_00944]

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

2dby, resolution 1.76Å

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