2czq: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-[[Image:2czq.gif|left|200px]]
- {{Structure
+==A novel cutinase-like protein from Cryptococcus sp.==
-|PDB= 2czq |SIZE=350|CAPTION= <scene name='initialview01'>2czq</scene>, resolution 1.05&Aring;
+<StructureSection load='2czq' size='340' side='right'caption='[[2czq]], [[Resolution|resolution]] 1.05&Aring;' scene=''>
-|SITE=
+== Structural highlights ==
-|LIGAND= <scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene> and <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>
+<table><tr><td colspan='2'>[[2czq]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Cryptococcus_sp._S-2 Cryptococcus sp. S-2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CZQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2CZQ FirstGlance]. <br>
-|ACTIVITY=
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.05&#8491;</td></tr>
-|GENE=
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
-}}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2czq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2czq OCA], [https://pdbe.org/2czq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2czq RCSB], [https://www.ebi.ac.uk/pdbsum/2czq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2czq ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/Q874E9_9TREE Q874E9_9TREE]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cz/2czq_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2czq ConSurf].
+<div style="clear:both"></div>
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+The structural and enzymatic characteristics of a cutinase-like enzyme (CLE) from Cryptococcus sp. strain S-2, which exhibits remote homology to a lipolytic enzyme and a cutinase from the fungus Fusarium solani (FS cutinase), were compared to investigate the unique substrate specificity of CLE. The crystal structure of CLE was solved to a 1.05 A resolution. Moreover, hydrolysis assays demonstrated the broad specificity of CLE for short and long-chain substrates, as well as the preferred specificity of FS cutinase for short-chain substrates. In addition, site-directed mutagenesis was performed to increase the hydrolysis activity on long-chain substrates, indicating that the hydrophobic aromatic residues are important for the specificity to the long-chain substrate. These results indicate that hydrophobic residues, especially the aromatic ones exposed to solvent, are important for retaining lipase activity.
-'''A novel cutinase-like protein from Cryptococcus sp.'''
+Crystal structure and enhanced activity of a cutinase-like enzyme from Cryptococcus sp. strain S-2.,Kodama Y, Masaki K, Kondo H, Suzuki M, Tsuda S, Nagura T, Shimba N, Suzuki E, Iefuji H Proteins. 2009 Nov 15;77(3):710-7. PMID:19544571<ref>PMID:19544571</ref>
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-==About this Structure==
+</div>
-CZQ is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Cryptococcus_sp. Cryptococcus sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CZQ OCA].
+<div class="pdbe-citations 2czq" style="background-color:#fffaf0;"></div>
-[[Category: Cryptococcus sp.]]
+== References ==
-[[Category: Single protein]]
+<references/>
-[[Category: Iefuji, H.]]
+__TOC__
-[[Category: Ikeda, H.]]
+</StructureSection>
-[[Category: Kamini, N R.]]
+[[Category: Cryptococcus sp. S-2]]
-[[Category: Kondo, H.]]
+[[Category: Large Structures]]
-[[Category: Masaki, K.]]
+[[Category: Iefuji H]]
-[[Category: Suzuki, M.]]
+[[Category: Ikeda H]]
-[[Category: Tsuda, S.]]
+[[Category: Kamini NR]]
-[[Category: CIT]]
+[[Category: Kondo H]]
-[[Category: EDO]]
+[[Category: Masaki K]]
-[[Category: alpha/beta hydrolase fold]]
+[[Category: Suzuki M]]
+[[Category: Tsuda S]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 16:21:37 2008''