1uhv: Difference between revisions
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==Crystal structure of beta-D-xylosidase from Thermoanaerobacterium saccharolyticum, a family 39 glycoside hydrolase== | ==Crystal structure of beta-D-xylosidase from Thermoanaerobacterium saccharolyticum, a family 39 glycoside hydrolase== | ||
<StructureSection load='1uhv' size='340' side='right' caption='[[1uhv]], [[Resolution|resolution]] 2.10Å' scene=''> | <StructureSection load='1uhv' size='340' side='right'caption='[[1uhv]], [[Resolution|resolution]] 2.10Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[1uhv]] is a 4 chain structure with sequence from [ | <table><tr><td colspan='2'>[[1uhv]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermoanaerobacterium_saccharolyticum Thermoanaerobacterium saccharolyticum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UHV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1UHV FirstGlance]. <br> | ||
</td></tr><tr id=' | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1Å</td></tr> | ||
<tr id=' | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DFX:1,2-DEOXY-2-FLUORO-XYLOPYRANOSE'>DFX</scene></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1uhv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1uhv OCA], [https://pdbe.org/1uhv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1uhv RCSB], [https://www.ebi.ac.uk/pdbsum/1uhv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1uhv ProSAT]</span></td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | |||
</table> | </table> | ||
== Function == | == Function == | ||
[ | [https://www.uniprot.org/uniprot/XYNB_THESA XYNB_THESA] Has hydrolytic activity towards xylopentaose, xylotriose, xylobiose and P-nitrophenyl-beta-D-xylopyranoside, but has no activity toward xylan. | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/uh/1uhv_consurf.spt"</scriptWhenChecked> | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/uh/1uhv_consurf.spt"</scriptWhenChecked> | ||
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/ | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1uhv ConSurf]. | ||
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
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From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
</div> | </div> | ||
<div class="pdbe-citations 1uhv" style="background-color:#fffaf0;"></div> | |||
==See Also== | ==See Also== | ||
*[[Xylosidase|Xylosidase]] | *[[Xylosidase 3D structures|Xylosidase 3D structures]] | ||
== References == | == References == | ||
<references/> | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | |||
[[Category: Thermoanaerobacterium saccharolyticum]] | [[Category: Thermoanaerobacterium saccharolyticum]] | ||
[[Category: | [[Category: Ahn HJ]] | ||
[[Category: | [[Category: Berendzen J]] | ||
[[Category: | [[Category: Il Lee B]] | ||
[[Category: Laivenieks | [[Category: Laivenieks M]] | ||
[[Category: Liong EC]] | |||
[[Category: Liong | [[Category: Pedelacq JD]] | ||
[[Category: Pedelacq | [[Category: Suh SW]] | ||
[[Category: Suh | [[Category: Vieille C]] | ||
[[Category: Vieille | [[Category: Vocadlo DJ]] | ||
[[Category: Vocadlo | [[Category: Withers SG]] | ||
[[Category: Withers | [[Category: Yang JK]] | ||
[[Category: Yang | [[Category: Yoon HJ]] | ||
[[Category: Yoon | [[Category: Zeikus GJ]] | ||
[[Category: Zeikus | |||