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==Crystal structures of collagen model peptides with pro-hyp-gly sequence at 1.3A==
==Crystal structures of collagen model peptides with pro-hyp-gly sequence at 1.3A==
<StructureSection load='1v4f' size='340' side='right' caption='[[1v4f]], [[Resolution|resolution]] 1.26&Aring;' scene=''>
<StructureSection load='1v4f' size='340' side='right'caption='[[1v4f]], [[Resolution|resolution]] 1.26&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[1v4f]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V4F OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1V4F FirstGlance]. <br>
<table><tr><td colspan='2'>[[1v4f]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V4F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1V4F FirstGlance]. <br>
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=HYP:4-HYDROXYPROLINE'>HYP</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.26&#8491;</td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1cag|1cag]], [[1v6q|1v6q]], [[1v7h|1v7h]]</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HYP:4-HYDROXYPROLINE'>HYP</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1v4f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v4f OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1v4f RCSB], [http://www.ebi.ac.uk/pdbsum/1v4f PDBsum]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1v4f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v4f OCA], [https://pdbe.org/1v4f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1v4f RCSB], [https://www.ebi.ac.uk/pdbsum/1v4f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1v4f ProSAT]</span></td></tr>
</table>
</table>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Triple-helical structures of (Pro-Hyp-Gly)n (n = 10, 11) at 100 K and room temperature (RT) were analyzed at 1.26 A resolution by using synchrotron radiation data. Totals of 49 and 42 water molecules per seven triplets in an asymmetric unit were found for the structures at 100 K and RT, respectively. These water molecules were classified into two groups, those in the first and second hydration shells. Although there was no significant difference between water molecules in the first shell at 100 K and those at RT, a significant difference between those in the second shell was observed. That is, the number of water molecules at RT decreased to one half and the average distance from peptide chains at RT became longer by about 0.3 A. On the other hand, of seven triplets in an asymmetric unit, three proline residues at the X position at 100 K clearly showed an up-puckering conformation, as opposed to the recent propensity-based hypothesis for the stabilization and destabilization of triple-helical structures by proline hydroxylation. This puckering was attributed to the interaction between proline rings and the surrounding water molecules at 100 K, which is much weaker at RT, as shown by longer average distance from peptide chains.
Crystal structures of collagen model peptides with Pro-Hyp-Gly repeating sequence at 1.26 A resolution: implications for proline ring puckering.,Okuyama K, Hongo C, Fukushima R, Wu G, Narita H, Noguchi K, Tanaka Y, Nishino N Biopolymers. 2004;76(5):367-77. PMID:15386273<ref>PMID:15386273</ref>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
== References ==
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Fukushima, R]]
[[Category: Large Structures]]
[[Category: Hongo, C]]
[[Category: Fukushima R]]
[[Category: Nishino, N]]
[[Category: Hongo C]]
[[Category: Noguchi, K]]
[[Category: Nishino N]]
[[Category: Okuyama, K]]
[[Category: Noguchi K]]
[[Category: Tanaka, Y]]
[[Category: Okuyama K]]
[[Category: Wu, G]]
[[Category: Tanaka Y]]
[[Category: Collagen]]
[[Category: Wu G]]
[[Category: Structural protein]]
[[Category: Triple-helix]]

Latest revision as of 09:17, 3 April 2024

Crystal structures of collagen model peptides with pro-hyp-gly sequence at 1.3ACrystal structures of collagen model peptides with pro-hyp-gly sequence at 1.3A

Structural highlights

1v4f is a 3 chain structure. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.26Å
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

1v4f, resolution 1.26Å

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