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==Predicting protein conformational response in prospective ligand discovery==
==Predicting protein conformational response in prospective ligand discovery==
<StructureSection load='4nvh' size='340' side='right' caption='[[4nvh]], [[Resolution|resolution]] 1.24&Aring;' scene=''>
<StructureSection load='4nvh' size='340' side='right'caption='[[4nvh]], [[Resolution|resolution]] 1.24&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[4nvh]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Baker's_yeast Baker's yeast]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4NVH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4NVH FirstGlance]. <br>
<table><tr><td colspan='2'>[[4nvh]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae_RM11-1a Saccharomyces cerevisiae RM11-1a]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4NVH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4NVH FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=2NB:3-NITROQUINOLIN-4-AMINE'>2NB</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.24&#8491;</td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4nva|4nva]], [[4nvb|4nvb]], [[4nvc|4nvc]], [[4nvd|4nvd]], [[4nve|4nve]], [[4nvf|4nvf]], [[4nvg|4nvg]], [[4nvi|4nvi]], [[4nvj|4nvj]], [[4nvk|4nvk]], [[4nvl|4nvl]], [[4nvm|4nvm]], [[4nvn|4nvn]], [[4nvo|4nvo]]</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=2NB:3-NITROQUINOLIN-4-AMINE'>2NB</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">CCP1 CCP CPO YKR066C, SCRG_04081 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=285006 Baker's yeast])</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4nvh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4nvh OCA], [https://pdbe.org/4nvh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4nvh RCSB], [https://www.ebi.ac.uk/pdbsum/4nvh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4nvh ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4nvh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4nvh OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4nvh RCSB], [http://www.ebi.ac.uk/pdbsum/4nvh PDBsum]</span></td></tr>
</table>
</table>
== Function ==
[https://www.uniprot.org/uniprot/B3LRE1_YEAS1 B3LRE1_YEAS1]


==See Also==
==See Also==
*[[Cytochrome c peroxidase|Cytochrome c peroxidase]]
*[[Cytochrome c peroxidase 3D structures|Cytochrome c peroxidase 3D structures]]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Baker's yeast]]
[[Category: Large Structures]]
[[Category: Fischer, M]]
[[Category: Saccharomyces cerevisiae RM11-1a]]
[[Category: Fraser, J S]]
[[Category: Fischer M]]
[[Category: Boltzmann weight]]
[[Category: Fraser JS]]
[[Category: Dynamic]]
[[Category: Energy penalty]]
[[Category: Flexibility]]
[[Category: Flexible docking]]
[[Category: Ligand binding]]
[[Category: Loop]]
[[Category: Model system]]
[[Category: Occupancy]]
[[Category: Oxidoreductase]]
[[Category: Side-chain]]

Latest revision as of 15:35, 1 March 2024

Predicting protein conformational response in prospective ligand discoveryPredicting protein conformational response in prospective ligand discovery

Structural highlights

4nvh is a 1 chain structure with sequence from Saccharomyces cerevisiae RM11-1a. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.24Å
Ligands:,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

B3LRE1_YEAS1

See Also

4nvh, resolution 1.24Å

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