1hkd: Difference between revisions

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-[[Image:1hkd.gif|left|200px]]<br />
-<applet load="1hkd" size="450" color="white" frame="true" align="right" spinBox="true"
-caption="1hkd, resolution 2.09&Aring;" />
-'''STRUCTURE OF PEA LECTIN IN COMPLEX WITH ALPHA-METHYL-D-GLUCOPYRANOSIDE'''<br />
-==About this Structure==
+==Structure of pea lectin in complex with alpha-methyl-D-glucopyranoside==
-HKD is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/Pisum_sativum Pisum sativum] with GYP, CA and MN as [http://en.wikipedia.org/wiki/ligands ligands]. Structure known Active Site: AC1. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1HKD OCA].
+<StructureSection load='1hkd' size='340' side='right'caption='[[1hkd]], [[Resolution|resolution]] 2.09&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[1hkd]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Pisum_sativum Pisum sativum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1HKD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1HKD FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.09&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GYP:METHYL-ALPHA-D-GLUCOPYRANOSIDE'>GYP</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1hkd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1hkd OCA], [https://pdbe.org/1hkd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1hkd RCSB], [https://www.ebi.ac.uk/pdbsum/1hkd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1hkd ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/LEC_PEA LEC_PEA] D-mannose specific lectin.
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hk/1hkd_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1hkd ConSurf].
+<div style="clear:both"></div>
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
 [[Category: Pisum sativum]]
-[[Category: Protein complex]]
+[[Category: Shevtsov MB]]
-[[Category: Shevtsov, M.B.]]
+[[Category: Tsygannik IN]]
-[[Category: Tsygannik, I.N.]]
-[[Category: CA]]
-[[Category: GYP]]
-[[Category: MN]]
-[[Category: calcium]]
-[[Category: carbohydrate binding protein]]
-[[Category: glycoprotein]]
-[[Category: plant lectin]]
-''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Mon Nov  5 12:46:55 2007''