1pb0: Difference between revisions

From Proteopedia
Jump to navigation Jump to search
← Older edit
No edit summary
No edit summary
 
(10 intermediate revisions by the same user not shown)
Line 1: Line 1:
[[Image:1pb0.jpg|left|200px]]


{{Structure
==YCDX PROTEIN IN AUTOINHIBITED STATE==
|PDB= 1pb0 |SIZE=350|CAPTION= <scene name='initialview01'>1pb0</scene>, resolution 1.95&Aring;
<StructureSection load='1pb0' size='340' side='right'caption='[[1pb0]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
|SITE=  
== Structural highlights ==
|LIGAND= <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene> and <scene name='pdbligand=FMT:FORMIC ACID'>FMT</scene>
<table><tr><td colspan='2'>[[1pb0]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PB0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1PB0 FirstGlance]. <br>
|ACTIVITY=  
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.95&#8491;</td></tr>
|GENE= YCDX ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
}}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1pb0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pb0 OCA], [https://pdbe.org/1pb0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1pb0 RCSB], [https://www.ebi.ac.uk/pdbsum/1pb0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1pb0 ProSAT]</span></td></tr>
 
</table>
'''YCDX PROTEIN IN AUTOINHIBITED STATE'''
== Function ==
 
[https://www.uniprot.org/uniprot/YCDX_ECOLI YCDX_ECOLI] Hydrolyzes p-nitrophenyl phosphate (pNPP) in vitro. Involved in the swarming motility process.<ref>PMID:21965574</ref>
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
1PB0 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PB0 OCA].  
Check<jmol>
 
  <jmolCheckbox>
==Reference==
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pb/1pb0_consurf.spt"</scriptWhenChecked>
Crystal structure of the Escherichia coli YcdX protein reveals a trinuclear zinc active site., Teplyakov A, Obmolova G, Khil PP, Howard AJ, Camerini-Otero RD, Gilliland GL, Proteins. 2003 May 1;51(2):315-8. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12661000 12661000]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1pb0 ConSurf].
<div style="clear:both"></div>
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
[[Category: Single protein]]
[[Category: Large Structures]]
[[Category: Camerini-Otero, R D.]]
[[Category: Camerini-Otero RD]]
[[Category: Gilliland, G L.]]
[[Category: Gilliland GL]]
[[Category: Khil, P P.]]
[[Category: Khil PP]]
[[Category: Obmolova, G.]]
[[Category: Obmolova G]]
[[Category: Teplyakov, A.]]
[[Category: Teplyakov A]]
[[Category: FMT]]
[[Category: SO4]]
[[Category: ZN]]
[[Category: autoinhibition]]
[[Category: beta-alpha-barrel]]
[[Category: structural genomic]]
[[Category: trinuclear zinc]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 13:22:06 2008''

Latest revision as of 12:41, 16 August 2023

YCDX PROTEIN IN AUTOINHIBITED STATEYCDX PROTEIN IN AUTOINHIBITED STATE

Structural highlights

1pb0 is a 3 chain structure with sequence from Escherichia coli. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.95Å
Ligands:, ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

YCDX_ECOLI Hydrolyzes p-nitrophenyl phosphate (pNPP) in vitro. Involved in the swarming motility process.[1]

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

References

  1. ↑ Redelberger D, Seduk F, Genest O, Mejean V, Leimkuhler S, Iobbi-Nivol C. YcdY protein of Escherichia coli, an atypical member of the TorD chaperone family. J Bacteriol. 2011 Dec;193(23):6512-6. doi: 10.1128/JB.05927-11. Epub 2011 Sep 30. PMID:21965574 doi:http://dx.doi.org/10.1128/JB.05927-11

1pb0, resolution 1.95Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
Retrieved from "https://proteopedia.openfox.io/wiki/index.php?title=1pb0&oldid=3832039"