4dyd: Difference between revisions

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 ==Substrate-directed dual catalysis of dicarbonyl compounds by diketoreductase==
-<StructureSection load='4dyd' size='340' side='right' caption='[[4dyd]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
+<StructureSection load='4dyd' size='340' side='right'caption='[[4dyd]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[4dyd]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Acinetobacter_baylyi Acinetobacter baylyi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DYD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4DYD FirstGlance]. <br>
+<table><tr><td colspan='2'>[[4dyd]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Acinetobacter_baylyi Acinetobacter baylyi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DYD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4DYD FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.95&#8491;</td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4dyd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4dyd OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4dyd RCSB], [http://www.ebi.ac.uk/pdbsum/4dyd PDBsum]</span></td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4dyd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4dyd OCA], [https://pdbe.org/4dyd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4dyd RCSB], [https://www.ebi.ac.uk/pdbsum/4dyd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4dyd ProSAT]</span></td></tr>
 </table>
-<div style="background-color:#fffaf0;">
+== Function ==
-== Publication Abstract from PubMed ==
+[https://www.uniprot.org/uniprot/B1P3E1_ACIBI B1P3E1_ACIBI]
-Diketoreductase catalyzes a two-step bioreduction on a dicarbonyl substrate through a novel dual catalysis mode, in which random hydride attack simultaneously forms two mono-carbonyl intermediates, and subsequently distinct catalytic sites are responsible for the reductions of respective carbonyl group of the intermediates to yield the final dihydroxy product.
-Dual catalysis mode for the dicarbonyl reduction catalyzed by diketoreductase.,Lu M, Huang Y, White MA, Wu X, Liu N, Cheng X, Chen Y Chem Commun (Camb). 2012 Oct 24;48(92):11352-4. doi: 10.1039/c2cc36334h. PMID:23073461<ref>PMID:23073461</ref>
-From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-</div>
-== References ==
-<references/>
 __TOC__
 </StructureSection>
 [[Category: Acinetobacter baylyi]]
-[[Category: Chen, Y]]
+[[Category: Large Structures]]
-[[Category: Cheng, X]]
+[[Category: Chen Y]]
-[[Category: Huang, Y]]
+[[Category: Cheng X]]
-[[Category: Liu, N]]
+[[Category: Huang Y]]
-[[Category: Lu, M]]
+[[Category: Liu N]]
-[[Category: White, M A]]
+[[Category: Lu M]]
-[[Category: Wu, X]]
+[[Category: White MA]]
-[[Category: Nadh]]
+[[Category: Wu X]]
-[[Category: Oxidoreductase]]