3hqx: Difference between revisions

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 ==Crystal structure of protein of unknown function (DUF1255,PF06865) from Acinetobacter sp. ADP1==
-<StructureSection load='3hqx' size='340' side='right' caption='[[3hqx]], [[Resolution|resolution]] 1.66&Aring;' scene=''>
+<StructureSection load='3hqx' size='340' side='right'caption='[[3hqx]], [[Resolution|resolution]] 1.66&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[3hqx]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Acinetobacter_sp._adp1 Acinetobacter sp. adp1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HQX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3HQX FirstGlance]. <br>
+<table><tr><td colspan='2'>[[3hqx]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Acinetobacter_baylyi_ADP1 Acinetobacter baylyi ADP1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HQX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3HQX FirstGlance]. <br>
-</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.66&#8491;</td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ACIAD0356 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=62977 Acinetobacter sp. ADP1])</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3hqx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hqx OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3hqx RCSB], [http://www.ebi.ac.uk/pdbsum/3hqx PDBsum], [http://www.topsan.org/Proteins/MCSG/3hqx TOPSAN]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3hqx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hqx OCA], [https://pdbe.org/3hqx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3hqx RCSB], [https://www.ebi.ac.uk/pdbsum/3hqx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3hqx ProSAT], [https://www.topsan.org/Proteins/MCSG/3hqx TOPSAN]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/PPNP_ACIAD PPNP_ACIAD] Catalyzes the phosphorolysis of diverse nucleosides, yielding D-ribose 1-phosphate and the respective free bases. Can use uridine, adenosine, guanosine, cytidine, thymidine, inosine and xanthosine as substrates. Also catalyzes the reverse reactions.[HAMAP-Rule:MF_01537]
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hq/3hqx_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hq/3hqx_consurf.spt"</scriptWhenChecked>
-     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3hqx ConSurf].
 <div style="clear:both"></div>
 __TOC__
 </StructureSection>
-[[Category: Acinetobacter sp. adp1]]
+[[Category: Acinetobacter baylyi ADP1]]
-[[Category: Dauter, Z]]
+[[Category: Large Structures]]
-[[Category: Freeman, L]]
+[[Category: Dauter Z]]
-[[Category: Hatzos, C]]
+[[Category: Freeman L]]
-[[Category: Joachimiak, A]]
+[[Category: Hatzos C]]
-[[Category: Structural genomic]]
+[[Category: Joachimiak A]]
-[[Category: Nocek, B]]
+[[Category: Nocek B]]
-[[Category: Duf1255]]
-[[Category: Mcsg]]
-[[Category: Pf06865]]
-[[Category: PSI, Protein structure initiative]]
-[[Category: Unknown function]]