3dxx: Difference between revisions

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 ==Crystal structure of EcTrmB==
-<StructureSection load='3dxx' size='340' side='right' caption='[[3dxx]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
+<StructureSection load='3dxx' size='340' side='right'caption='[[3dxx]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[3dxx]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DXX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DXX FirstGlance]. <br>
+<table><tr><td colspan='2'>[[3dxx]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DXX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DXX FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.05&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3dxy|3dxy]], [[3dxz|3dxz]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">trmB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dxx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dxx OCA], [https://pdbe.org/3dxx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dxx RCSB], [https://www.ebi.ac.uk/pdbsum/3dxx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dxx ProSAT]</span></td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/tRNA_(guanine-N(7)-)-methyltransferase tRNA (guanine-N(7)-)-methyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.1.1.33 2.1.1.33] </span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dxx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dxx OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3dxx RCSB], [http://www.ebi.ac.uk/pdbsum/3dxx PDBsum]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/TRMB_ECOLI TRMB_ECOLI] Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dx/3dxx_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dx/3dxx_consurf.spt"</scriptWhenChecked>
      <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dxx ConSurf].
 <div style="clear:both"></div>
 ==See Also==
-*[[TRNA methyltransferase|TRNA methyltransferase]]
+*[[Actin-related protein 3D structures|Actin-related protein 3D structures]]
+*[[TRNA methyltransferase 3D structures|TRNA methyltransferase 3D structures]]
 __TOC__
 </StructureSection>
-[[Category: Escherichia coli]]
+[[Category: Escherichia coli K-12]]
-[[Category: Gao, Y X]]
+[[Category: Large Structures]]
-[[Category: Liu, Q]]
+[[Category: Gao YX]]
-[[Category: Niu, L W]]
+[[Category: Liu Q]]
-[[Category: Teng, M K]]
+[[Category: Niu LW]]
-[[Category: Zhou, H H]]
+[[Category: Teng MK]]
-[[Category: Methyltransferase]]
+[[Category: Zhou HH]]
-[[Category: Rossmann fold methyltransferase]]
-[[Category: S-adenosyl-l-methionine]]
-[[Category: Transferase]]
-[[Category: Trna modification]]
-[[Category: Trna processing]]