3bma: Difference between revisions

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==Crystal structure of D-alanyl-lipoteichoic acid synthetase from Streptococcus pneumoniae R6==
==Crystal structure of D-alanyl-lipoteichoic acid synthetase from Streptococcus pneumoniae R6==
<StructureSection load='3bma' size='340' side='right' caption='[[3bma]], [[Resolution|resolution]] 2.24&Aring;' scene=''>
<StructureSection load='3bma' size='340' side='right'caption='[[3bma]], [[Resolution|resolution]] 2.24&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[3bma]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptococcus_pneumoniae Streptococcus pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BMA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3BMA FirstGlance]. <br>
<table><tr><td colspan='2'>[[3bma]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_pneumoniae_R6 Streptococcus pneumoniae R6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BMA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BMA FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.24&#8491;</td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">dltD, spr1979 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1313 Streptococcus pneumoniae])</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3bma FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bma OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3bma RCSB], [http://www.ebi.ac.uk/pdbsum/3bma PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/3bma TOPSAN]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bma FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bma OCA], [https://pdbe.org/3bma PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bma RCSB], [https://www.ebi.ac.uk/pdbsum/3bma PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bma ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3bma TOPSAN]</span></td></tr>
</table>
</table>
== Function ==
[https://www.uniprot.org/uniprot/Q8DN13_STRR6 Q8DN13_STRR6]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
   <jmolCheckbox>
   <jmolCheckbox>
     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bm/3bma_consurf.spt"</scriptWhenChecked>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bm/3bma_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
     <text>to colour the structure by Evolutionary Conservation</text>
   </jmolCheckbox>
   </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3bma ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Bain, K]]
[[Category: Large Structures]]
[[Category: D-alanyl-lipoteichoic acid biosynthesis]]
[[Category: Streptococcus pneumoniae R6]]
[[Category: Almo SC]]
[[Category: Bain K]]
[[Category: Bonanno JB]]
[[Category: Burley SK]]
[[Category: Gheyi T]]
[[Category: Iizuka M]]
[[Category: Koss J]]
[[Category: Patskovsky Y]]
[[Category: Rutter M]]
[[Category: Sauder JM]]
[[Category: Smith D]]
[[Category: Sridhar V]]
[[Category: Wasserman SR]]

Latest revision as of 12:29, 21 February 2024

Crystal structure of D-alanyl-lipoteichoic acid synthetase from Streptococcus pneumoniae R6Crystal structure of D-alanyl-lipoteichoic acid synthetase from Streptococcus pneumoniae R6

Structural highlights

3bma is a 6 chain structure with sequence from Streptococcus pneumoniae R6. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.24Å
Ligands:,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

Q8DN13_STRR6

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

3bma, resolution 2.24Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA