2vul: Difference between revisions

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 ==Thermostable mutant of ENVIRONMENTALLY ISOLATED GH11 XYLANASE==
-<StructureSection load='2vul' size='340' side='right' caption='[[2vul]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
+<StructureSection load='2vul' size='340' side='right'caption='[[2vul]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[2vul]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VUL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VUL FirstGlance]. <br>
+<table><tr><td colspan='2'>[[2vul]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VUL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VUL FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=12P:DODECAETHYLENE+GLYCOL'>12P</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2vuj|2vuj]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=12P:DODECAETHYLENE+GLYCOL'>12P</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Endo-1,4-beta-xylanase Endo-1,4-beta-xylanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.8 3.2.1.8] </span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vul FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vul OCA], [https://pdbe.org/2vul PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vul RCSB], [https://www.ebi.ac.uk/pdbsum/2vul PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vul ProSAT]</span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vul FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vul OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vul RCSB], [http://www.ebi.ac.uk/pdbsum/2vul PDBsum]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/B2LWN3_9BACT B2LWN3_9BACT]
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vu/2vul_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vu/2vul_consurf.spt"</scriptWhenChecked>
-     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2vul ConSurf].
 <div style="clear:both"></div>
 <div style="background-color:#fffaf0;">
@@ Line 26: / Line 28: @@
 From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 </div>
+<div class="pdbe-citations 2vul" style="background-color:#fffaf0;"></div>
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Bacillus coli migula 1895]]
+[[Category: Escherichia coli]]
-[[Category: Endo-1,4-beta-xylanase]]
+[[Category: Large Structures]]
-[[Category: Desantis, G.]]
+[[Category: Desantis G]]
-[[Category: Dumon, C.]]
+[[Category: Dumon C]]
-[[Category: Flint, J E.]]
+[[Category: Flint JE]]
-[[Category: Gilbert, H J.]]
+[[Category: Gilbert HJ]]
-[[Category: Healey, S.]]
+[[Category: Healey S]]
-[[Category: Lakey, J H.]]
+[[Category: Lakey JH]]
-[[Category: Lewis, R J.]]
+[[Category: Lewis RJ]]
-[[Category: Luginbuhl, P.]]
+[[Category: Luginbuhl P]]
-[[Category: Parra-Gessert, L.]]
+[[Category: Parra-Gessert L]]
-[[Category: Sun, M.]]
+[[Category: Sun M]]
-[[Category: Tan, X.]]
+[[Category: Tan X]]
-[[Category: Todaro, T.]]
+[[Category: Todaro T]]
-[[Category: Varvak, A.]]
+[[Category: Varvak A]]
-[[Category: Wall, M A.]]
+[[Category: Wall MA]]
-[[Category: Weiner, D P.]]
+[[Category: Weiner DP]]
-[[Category: Gh11]]
-[[Category: Glycosidase]]
-[[Category: Hydrolase]]
-[[Category: Xylanase]]