1zdk: Difference between revisions

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OCA

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 ==STRUCTURE OF BACTERIOPHAGE COAT PROTEIN-LOOP RNA COMPLEX==
-<StructureSection load='1zdk' size='340' side='right' caption='[[1zdk]], [[Resolution|resolution]] 2.86&Aring;' scene=''>
+<StructureSection load='1zdk' size='340' side='right'caption='[[1zdk]], [[Resolution|resolution]] 2.86&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[1zdk]] is a 5 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacterio_phage_ms2 Enterobacterio phage ms2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZDK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ZDK FirstGlance]. <br>
+<table><tr><td colspan='2'>[[1zdk]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_phage_MS2 Escherichia phage MS2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZDK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ZDK FirstGlance]. <br>
-</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1zdk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zdk OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1zdk RCSB], [http://www.ebi.ac.uk/pdbsum/1zdk PDBsum]</span></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.86&#8491;</td></tr>
-<table>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1zdk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zdk OCA], [https://pdbe.org/1zdk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1zdk RCSB], [https://www.ebi.ac.uk/pdbsum/1zdk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1zdk ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/CAPSD_BPMS2 CAPSD_BPMS2] Self-assembles to form the T=3 icosahedral virus shell that protects the viral nucleic acid. Acts as a translational repressor by binding with high specificity to a single stem-loop structure in the genomic RNA that contains the initiation codon of the gene for the viral replicase. Involved in virus assembly through the interaction between a capsid protein dimer and the multiple packaging signals present in the RNA genome.<ref>PMID:16531233</ref> <ref>PMID:18662904</ref> <ref>PMID:26608810</ref> <ref>PMID:8254664</ref> <ref>PMID:9245600</ref> <ref>PMID:9469847</ref>
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zd/1zdk_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zd/1zdk_consurf.spt"</scriptWhenChecked>
      <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1zdk ConSurf].
 <div style="clear:both"></div>
 <div style="background-color:#fffaf0;">
@@ Line 23: / Line 27: @@
 From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 </div>
+<div class="pdbe-citations 1zdk" style="background-color:#fffaf0;"></div>
+==See Also==
+*[[Virus coat proteins 3D structures|Virus coat proteins 3D structures]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Enterobacterio phage ms2]]
+[[Category: Escherichia phage MS2]]
-[[Category: Grahn, E.]]
+[[Category: Large Structures]]
-[[Category: Liljas, L.]]
+[[Category: Grahn E]]
-[[Category: Stonehouse, N J.]]
+[[Category: Liljas L]]
-[[Category: Valegard, K.]]
+[[Category: Stonehouse NJ]]
-[[Category: Vandenworm, S.]]
+[[Category: Valegard K]]
-[[Category: Coat protein]]
+[[Category: Vandenworm S]]
-[[Category: Icosahedral virus]]
-[[Category: Rna fragment]]
-[[Category: Rna-binding]]
-[[Category: Viral protein capsid]]
-[[Category: Virus-rna complex]]