2x8l: Difference between revisions

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-==PLASMODIUM FALCIPARUM LACTATE DEHYDROGENASE APO STRUCTURE==
-<StructureSection load='2x8l' size='340' side='right' caption='[[2x8l]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
+==Plasmodium falciparum lactate dehydrogenase apo structure==
+<StructureSection load='2x8l' size='340' side='right'caption='[[2x8l]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[2x8l]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Plasmodium_falciparum Plasmodium falciparum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2X8L OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2X8L FirstGlance]. <br>
+<table><tr><td colspan='2'>[[2x8l]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Plasmodium_falciparum Plasmodium falciparum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2X8L OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2X8L FirstGlance]. <br>
-</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene><br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
-<tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1t26|1t26]], [[1t2e|1t2e]], [[2a94|2a94]], [[1t25|1t25]], [[1u5a|1u5a]], [[1u5c|1u5c]], [[1xiv|1xiv]], [[1ldg|1ldg]], [[1t24|1t24]], [[1t2c|1t2c]], [[1cet|1cet]], [[1t2d|1t2d]], [[1u4s|1u4s]], [[1ceq|1ceq]], [[1u4o|1u4o]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/L-lactate_dehydrogenase L-lactate dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.27 1.1.1.27] </span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2x8l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2x8l OCA], [https://pdbe.org/2x8l PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2x8l RCSB], [https://www.ebi.ac.uk/pdbsum/2x8l PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2x8l ProSAT]</span></td></tr>
-<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2x8l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2x8l OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2x8l RCSB], [http://www.ebi.ac.uk/pdbsum/2x8l PDBsum]</span></td></tr>
+</table>
-<table>
+== Function ==
+[https://www.uniprot.org/uniprot/Q71T02_PLAFA Q71T02_PLAFA]
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/x8/2x8l_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/x8/2x8l_consurf.spt"</scriptWhenChecked>
      <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2x8l ConSurf].
 <div style="clear:both"></div>
 ==See Also==
-*[[Lactate Dehydrogenase|Lactate Dehydrogenase]]
+*[[Lactate dehydrogenase 3D structures|Lactate dehydrogenase 3D structures]]
 __TOC__
 </StructureSection>
-[[Category: L-lactate dehydrogenase]]
+[[Category: Large Structures]]
 [[Category: Plasmodium falciparum]]
-[[Category: Birkinshaw, R W.]]
+[[Category: Birkinshaw RW]]
-[[Category: Brady, R L.]]
+[[Category: Brady RL]]
-[[Category: Glycolysis]]
-[[Category: Nad]]
-[[Category: Oxidoreductase]]
-[[Category: Pyruvate]]