2qzu: Difference between revisions
No edit summary |
No edit summary |
||
| (4 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
==Crystal structure of the putative sulfatase yidJ from Bacteroides fragilis. Northeast Structural Genomics Consortium target BfR123== | ==Crystal structure of the putative sulfatase yidJ from Bacteroides fragilis. Northeast Structural Genomics Consortium target BfR123== | ||
<StructureSection load='2qzu' size='340' side='right' caption='[[2qzu]], [[Resolution|resolution]] 1.70Å' scene=''> | <StructureSection load='2qzu' size='340' side='right'caption='[[2qzu]], [[Resolution|resolution]] 1.70Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[2qzu]] is a 1 chain structure with sequence from [ | <table><tr><td colspan='2'>[[2qzu]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacfr Bacfr]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QZU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2QZU FirstGlance]. <br> | ||
</td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | </td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | ||
<tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1auk|1auk]], [[1hdh|1hdh]]</td></tr> | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1auk|1auk]], [[1hdh|1hdh]]</div></td></tr> | ||
<tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BF0881 ([ | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BF0881 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=295405 BACFR])</td></tr> | ||
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2qzu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qzu OCA], [https://pdbe.org/2qzu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2qzu RCSB], [https://www.ebi.ac.uk/pdbsum/2qzu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2qzu ProSAT], [https://www.topsan.org/Proteins/NESGC/2qzu TOPSAN]</span></td></tr> | ||
<table> | </table> | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qz/2qzu_consurf.spt"</scriptWhenChecked> | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qz/2qzu_consurf.spt"</scriptWhenChecked> | ||
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2qzu ConSurf]. | ||
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: | [[Category: Bacfr]] | ||
[[Category: Abashidze, M | [[Category: Large Structures]] | ||
[[Category: Acton, T B | [[Category: Abashidze, M]] | ||
[[Category: Cunningham, K | [[Category: Acton, T B]] | ||
[[Category: Hunt, J F | [[Category: Cunningham, K]] | ||
[[Category: Maglaqui, M | [[Category: Hunt, J F]] | ||
[[Category: Montelione, G T | [[Category: Maglaqui, M]] | ||
[[Category: | [[Category: Montelione, G T]] | ||
[[Category: Owens, L | [[Category: Structural genomic]] | ||
[[Category: Seetharaman, J | [[Category: Owens, L]] | ||
[[Category: Tong, L | [[Category: Seetharaman, J]] | ||
[[Category: Vorobiev, S M | [[Category: Tong, L]] | ||
[[Category: Wang, D | [[Category: Vorobiev, S M]] | ||
[[Category: Xiao, R | [[Category: Wang, D]] | ||
[[Category: Xiao, R]] | |||
[[Category: Arylsulfatase]] | [[Category: Arylsulfatase]] | ||
[[Category: Bfr123]] | [[Category: Bfr123]] | ||
[[Category: Hydrolase]] | [[Category: Hydrolase]] | ||
[[Category: Nesg]] | [[Category: Nesg]] | ||
[[Category: | [[Category: PSI, Protein structure initiative]] | ||
[[Category: Q64xz4_bacfr]] | [[Category: Q64xz4_bacfr]] | ||
[[Category: Sulfatase]] | [[Category: Sulfatase]] | ||
[[Category: Yidj]] | [[Category: Yidj]] | ||