2pyr: Difference between revisions

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OCA

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 ==PHOTOACTIVE YELLOW PROTEIN, 1 NANOSECOND INTERMEDIATE (287K)==
-<StructureSection load='2pyr' size='340' side='right' caption='[[2pyr]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
+<StructureSection load='2pyr' size='340' side='right'caption='[[2pyr]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[2pyr]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Halorhodospira_halophila Halorhodospira halophila]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PYR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2PYR FirstGlance]. <br>
+<table><tr><td colspan='2'>[[2pyr]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Dsm_244 Dsm 244]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PYR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PYR FirstGlance]. <br>
-</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HC4:4-HYDROXYCINNAMIC+ACID'>HC4</scene><br>
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HC4:4-HYDROXYCINNAMIC+ACID'>HC4</scene></td></tr>
-<tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">P16113 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1053 Halorhodospira halophila])</td></tr>
+<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">P16113 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1053 DSM 244])</td></tr>
-<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2pyr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pyr OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2pyr RCSB], [http://www.ebi.ac.uk/pdbsum/2pyr PDBsum]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pyr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pyr OCA], [https://pdbe.org/2pyr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pyr RCSB], [https://www.ebi.ac.uk/pdbsum/2pyr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pyr ProSAT]</span></td></tr>
-<table>
+</table>
+== Function ==
+[[https://www.uniprot.org/uniprot/PYP_HALHA PYP_HALHA]] Photoactive blue light protein. Probably functions as a photoreceptor for a negative phototaxis response.
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/py/2pyr_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/py/2pyr_consurf.spt"</scriptWhenChecked>
      <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2pyr ConSurf].
 <div style="clear:both"></div>
 <div style="background-color:#fffaf0;">
@@ Line 25: / Line 28: @@
 From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 </div>
+<div class="pdbe-citations 2pyr" style="background-color:#fffaf0;"></div>
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Halorhodospira halophila]]
+[[Category: Dsm 244]]
-[[Category: Bourgeois, D.]]
+[[Category: Large Structures]]
-[[Category: Hellingwerf, K.]]
+[[Category: Bourgeois, D]]
-[[Category: Kort, R.]]
+[[Category: Hellingwerf, K]]
-[[Category: Moffat, K.]]
+[[Category: Kort, R]]
-[[Category: Perman, B.]]
+[[Category: Moffat, K]]
-[[Category: Pradervand, C.]]
+[[Category: Perman, B]]
-[[Category: Ren, Z.]]
+[[Category: Pradervand, C]]
-[[Category: Schotte, F.]]
+[[Category: Ren, Z]]
-[[Category: Srajer, V.]]
+[[Category: Schotte, F]]
-[[Category: Teng, T Y.]]
+[[Category: Srajer, V]]
-[[Category: Ursby, T.]]
+[[Category: Teng, T Y]]
-[[Category: Wulff, M.]]
+[[Category: Ursby, T]]
+[[Category: Wulff, M]]
 [[Category: Light sensor for negative phototaxis]]
 [[Category: Photoreceptor]]