1bdx: Difference between revisions

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OCA

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 ==E. COLI DNA HELICASE RUVA WITH BOUND DNA HOLLIDAY JUNCTION, ALPHA CARBONS AND PHOSPHATE ATOMS ONLY==
-<StructureSection load='1bdx' size='340' side='right' caption='[[1bdx]], [[Resolution|resolution]] 6.00&Aring;' scene=''>
+<StructureSection load='1bdx' size='340' side='right'caption='[[1bdx]], [[Resolution|resolution]] 6.00&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[1bdx]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli_bl21(de3) Escherichia coli bl21(de3)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BDX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1BDX FirstGlance]. <br>
+<table><tr><td colspan='2'>[[1bdx]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_BL21(DE3) Escherichia coli BL21(DE3)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BDX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1BDX FirstGlance]. <br>
-</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1bdx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bdx OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1bdx RCSB], [http://www.ebi.ac.uk/pdbsum/1bdx PDBsum]</span></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 6&#8491;</td></tr>
-<table>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1bdx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bdx OCA], [https://pdbe.org/1bdx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1bdx RCSB], [https://www.ebi.ac.uk/pdbsum/1bdx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1bdx ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/RUVA_ECOLI RUVA_ECOLI] The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. Binds both single- and double-stranded DNA (dsDNA). Binds preferentially to supercoiled rather than to relaxed dsDNA.<ref>PMID:8433990</ref>
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bd/1bdx_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bd/1bdx_consurf.spt"</scriptWhenChecked>
      <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1bdx ConSurf].
 <div style="clear:both"></div>
 <div style="background-color:#fffaf0;">
@@ Line 23: / Line 27: @@
 From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 </div>
+<div class="pdbe-citations 1bdx" style="background-color:#fffaf0;"></div>
 ==See Also==
-*[[Helicase|Helicase]]
+*[[Helicase 3D structures|Helicase 3D structures]]
-*[[Temperature color schemes|Temperature color schemes]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Artymiuk, P J.]]
+[[Category: Large Structures]]
-[[Category: Hargreaves, D.]]
+[[Category: Artymiuk PJ]]
-[[Category: Lloyd, R G.]]
+[[Category: Hargreaves D]]
-[[Category: Rafferty, J B.]]
+[[Category: Lloyd RG]]
-[[Category: Rice, D W.]]
+[[Category: Rafferty JB]]
-[[Category: Sedelnikova, S E.]]
+[[Category: Rice DW]]
-[[Category: Branch migration]]
+[[Category: Sedelnikova SE]]
-[[Category: Complex dna-binding protein-dna]]
-[[Category: Dna-binding]]
-[[Category: Holliday junction]]
-[[Category: Ruv]]
-[[Category: Transferase-dna complex]]