1nqk: Difference between revisions

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OCA

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 ==Structural Genomics, Crystal structure of Alkanesulfonate monooxygenase==
-<StructureSection load='1nqk' size='340' side='right' caption='[[1nqk]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
+<StructureSection load='1nqk' size='340' side='right'caption='[[1nqk]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[1nqk]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NQK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1NQK FirstGlance]. <br>
+<table><tr><td colspan='2'>[[1nqk]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NQK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1NQK FirstGlance]. <br>
-</td></tr><tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ycbN ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])</td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
-<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1nqk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1nqk OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1nqk RCSB], [http://www.ebi.ac.uk/pdbsum/1nqk PDBsum], [http://www.topsan.org/Proteins/MCSG/1nqk TOPSAN]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1nqk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1nqk OCA], [https://pdbe.org/1nqk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1nqk RCSB], [https://www.ebi.ac.uk/pdbsum/1nqk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1nqk ProSAT], [https://www.topsan.org/Proteins/MCSG/1nqk TOPSAN]</span></td></tr>
-<table>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/SSUD_ECOLI SSUD_ECOLI] Involved in desulfonation of aliphatic sulfonates. Catalyzes the conversion of pentanesulfonic acid to sulfite and pentaldehyde and is able to desulfonate a wide range of sulfonated substrates including C-2 to C-10 unsubstituted linear alkanesulfonates, substituted ethanesulfonic acids and sulfonated buffers.[HAMAP-Rule:MF_01229]
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/nq/1nqk_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/nq/1nqk_consurf.spt"</scriptWhenChecked>
      <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1nqk ConSurf].
 <div style="clear:both"></div>
 __TOC__
 </StructureSection>
 [[Category: Escherichia coli]]
-[[Category: Edwards, A.]]
+[[Category: Large Structures]]
-[[Category: Joachimiak, A.]]
+[[Category: Edwards A]]
-[[Category: MCSG, Midwest Center for Structural Genomics.]]
+[[Category: Joachimiak A]]
-[[Category: Savchenko, A.]]
+[[Category: Savchenko A]]
-[[Category: Skarina, T.]]
+[[Category: Skarina T]]
-[[Category: Zhang, R.]]
+[[Category: Zhang R]]
-[[Category: Beta barrel]]
-[[Category: Mcsg]]
-[[Category: Midwest center for structural genomic]]
-[[Category: Oxidoreductase]]
-[[Category: Protein structure initiative]]
-[[Category: Psi]]
-[[Category: Structural genomic]]