3u02: Difference between revisions
Jump to navigation
Jump to search
No edit summary |
No edit summary |
||
| (3 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
==Crystal Structure of the tRNA modifier TiaS from Pyrococcus furiosus, Northeast Structural Genomics Consortium Target PfR225== | ==Crystal Structure of the tRNA modifier TiaS from Pyrococcus furiosus, Northeast Structural Genomics Consortium Target PfR225== | ||
<StructureSection load='3u02' size='340' side='right' caption='[[3u02]], [[Resolution|resolution]] 2.40Å' scene=''> | <StructureSection load='3u02' size='340' side='right'caption='[[3u02]], [[Resolution|resolution]] 2.40Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[3u02]] is a 4 chain structure with sequence from [ | <table><tr><td colspan='2'>[[3u02]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_furiosus_DSM_3638 Pyrococcus furiosus DSM 3638]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3U02 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3U02 FirstGlance]. <br> | ||
</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand= | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.399Å</td></tr> | ||
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=TPO:PHOSPHOTHREONINE'>TPO</scene></td></tr> | |||
<tr | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3u02 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3u02 OCA], [https://pdbe.org/3u02 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3u02 RCSB], [https://www.ebi.ac.uk/pdbsum/3u02 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3u02 ProSAT]</span></td></tr> | ||
</table> | |||
<table> | == Function == | ||
[https://www.uniprot.org/uniprot/Q8TZX0_PYRFU Q8TZX0_PYRFU] ATP-dependent agmatine transferase that catalyzes the formation of 2-agmatinylcytidine (agm2C) at the wobble position (C34) of tRNA(Ile2), converting the codon specificity from AUG to AUA (By similarity).[HAMAP-Rule:MF_01892] | |||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Pyrococcus furiosus | [[Category: Large Structures]] | ||
[[Category: Acton | [[Category: Pyrococcus furiosus DSM 3638]] | ||
[[Category: Ciccosanti | [[Category: Acton TB]] | ||
[[Category: Everett | [[Category: Ciccosanti C]] | ||
[[Category: Hunt | [[Category: Everett JK]] | ||
[[Category: Kuzin | [[Category: Hunt JF]] | ||
[[Category: Lew | [[Category: Kuzin A]] | ||
[[Category: Montelione | [[Category: Lew S]] | ||
[[Category: Montelione GT]] | |||
[[Category: Nair | [[Category: Nair R]] | ||
[[Category: Rost | [[Category: Rost B]] | ||
[[Category: Sahdev | [[Category: Sahdev S]] | ||
[[Category: Seetharaman | [[Category: Seetharaman J]] | ||
[[Category: Tong | [[Category: Tong L]] | ||
[[Category: Wang | [[Category: Wang H]] | ||
[[Category: Xiao | [[Category: Xiao R]] | ||
Latest revision as of 12:44, 30 October 2024
Crystal Structure of the tRNA modifier TiaS from Pyrococcus furiosus, Northeast Structural Genomics Consortium Target PfR225Crystal Structure of the tRNA modifier TiaS from Pyrococcus furiosus, Northeast Structural Genomics Consortium Target PfR225
Structural highlights
FunctionQ8TZX0_PYRFU ATP-dependent agmatine transferase that catalyzes the formation of 2-agmatinylcytidine (agm2C) at the wobble position (C34) of tRNA(Ile2), converting the codon specificity from AUG to AUA (By similarity).[HAMAP-Rule:MF_01892] |
| ||||||||||||||||||