3ghd: Difference between revisions

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Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

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 ==Crystal structure of a cystathionine beta-synthase domain protein fused to a Zn-ribbon-like domain==
-<StructureSection load='3ghd' size='340' side='right' caption='[[3ghd]], [[Resolution|resolution]] 1.81&Aring;' scene=''>
+<StructureSection load='3ghd' size='340' side='right'caption='[[3ghd]], [[Resolution|resolution]] 1.81&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[3ghd]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3fio 3fio]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GHD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GHD FirstGlance]. <br>
+<table><tr><td colspan='2'>[[3ghd]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_43587 Atcc 43587]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3fio 3fio]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GHD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GHD FirstGlance]. <br>
-</td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ghd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ghd OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3ghd RCSB], [http://www.ebi.ac.uk/pdbsum/3ghd PDBsum], [http://www.topsan.org/Proteins/MCSG/3ghd TOPSAN]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ghd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ghd OCA], [https://pdbe.org/3ghd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ghd RCSB], [https://www.ebi.ac.uk/pdbsum/3ghd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ghd ProSAT], [https://www.topsan.org/Proteins/MCSG/3ghd TOPSAN]</span></td></tr>
-<table>
+</table>
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gh/3ghd_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gh/3ghd_consurf.spt"</scriptWhenChecked>
      <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ghd ConSurf].
 <div style="clear:both"></div>
+==See Also==
+*[[Aminoacyl tRNA synthetase 3D structures|Aminoacyl tRNA synthetase 3D structures]]
 __TOC__
 </StructureSection>
-[[Category: Pyrococcus furiosus]]
+[[Category: Atcc 43587]]
-[[Category: Brown, G.]]
+[[Category: Large Structures]]
-[[Category: Chruszcz, M.]]
+[[Category: Brown, G]]
-[[Category: Dong, A.]]
+[[Category: Chruszcz, M]]
-[[Category: Edwards, A M.]]
+[[Category: Dong, A]]
-[[Category: Joachimiak, A.]]
+[[Category: Edwards, A M]]
-[[Category: MCSG, Midwest Center for Structural Genomics.]]
+[[Category: Joachimiak, A]]
-[[Category: Minor, W.]]
+[[Category: Structural genomic]]
-[[Category: Proudfoot, M.]]
+[[Category: Minor, W]]
-[[Category: Savchenko, A.]]
+[[Category: Proudfoot, M]]
-[[Category: Xu, X.]]
+[[Category: Savchenko, A]]
-[[Category: Yaleunin, A.]]
+[[Category: Xu, X]]
+[[Category: Yaleunin, A]]
 [[Category: Apc40009]]
 [[Category: Cystathionine beta-synthase domain protein]]
@@ Line 35: / Line 40: @@
 [[Category: Metal bindin]]
 [[Category: Metal binding protein]]
-[[Category: Midwest center for structural genomic]]
 [[Category: Nucleotide binding protein]]
 [[Category: Pf1953]]
-[[Category: Protein structure initiative]]
+[[Category: PSI, Protein structure initiative]]
-[[Category: Psi-2]]
-[[Category: Structural genomic]]