3zoh: Difference between revisions

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 ==Crystal structure of FMN-binding protein (YP_005476) from Thermus thermophilus with bound 1-Cyclohex-2-enone==
-<StructureSection load='3zoh' size='340' side='right' caption='[[3zoh]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
+<StructureSection load='3zoh' size='340' side='right'caption='[[3zoh]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[3zoh]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZOH OCA]. <br>
+<table><tr><td colspan='2'>[[3zoh]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB27 Thermus thermophilus HB27]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZOH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3ZOH FirstGlance]. <br>
-</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=A2Q:CYCLOHEX-2-EN-1-ONE'>A2Q</scene>, <scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene><br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.65&#8491;</td></tr>
-<tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3zoc|3zoc]], [[3zod|3zod]], [[3zoe|3zoe]], [[3zof|3zof]], [[3zog|3zog]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=A2Q:CYCLOHEX-2-EN-1-ONE'>A2Q</scene>, <scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene></td></tr>
-<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glucokinase Glucokinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.2 2.7.1.2] </span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3zoh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zoh OCA], [https://pdbe.org/3zoh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3zoh RCSB], [https://www.ebi.ac.uk/pdbsum/3zoh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3zoh ProSAT]</span></td></tr>
-<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3zoh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zoh OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3zoh RCSB], [http://www.ebi.ac.uk/pdbsum/3zoh PDBsum]</span></td></tr>
+</table>
-<table>
+== Function ==
+[https://www.uniprot.org/uniprot/Q72HI0_THET2 Q72HI0_THET2]
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+The exploitation of catalytic promiscuity and the application of de novo design have recently opened the access to novel, non-natural enzymatic activities. Here we describe a structural bioinformatic method for predicting catalytic activities of enzymes based on three-dimensional constellations of functional groups in active sites ('catalophores'). As a proof-of-concept we identify two enzymes with predicted promiscuous ene-reductase activity (reduction of activated C-C double bonds) and compare them with known ene-reductases, that is, members of the Old Yellow Enzyme family. Despite completely different amino acid sequences, overall structures and protein folds, high-resolution crystal structures reveal equivalent binding modes of typical Old Yellow Enzyme substrates and ligands. Biochemical and biocatalytic data show that the two enzymes indeed possess ene-reductase activity and reveal an inverted stereopreference compared with Old Yellow Enzymes for some substrates. This method could thus be a tool for the identification of viable starting points for the development and engineering of novel biocatalysts.
+Identification of promiscuous ene-reductase activity by mining structural databases using active site constellations.,Steinkellner G, Gruber CC, Pavkov-Keller T, Binter A, Steiner K, Winkler C, Lyskowski A, Schwamberger O, Oberer M, Schwab H, Faber K, Macheroux P, Gruber K Nat Commun. 2014 Jun 23;5:4150. doi: 10.1038/ncomms5150. PMID:24954722<ref>PMID:24954722</ref>
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+</div>
+<div class="pdbe-citations 3zoh" style="background-color:#fffaf0;"></div>
+== References ==
+<references/>
 __TOC__
 </StructureSection>
-[[Category: Faber, K.]]
+[[Category: Large Structures]]
-[[Category: Gruber, C C.]]
+[[Category: Thermus thermophilus HB27]]
-[[Category: Gruber, K.]]
+[[Category: Faber K]]
-[[Category: Pavkov-Keller, T.]]
+[[Category: Gruber CC]]
-[[Category: Schwab, H.]]
+[[Category: Gruber K]]
-[[Category: Schwamberger, O.]]
+[[Category: Pavkov-Keller T]]
-[[Category: Steiner, K.]]
+[[Category: Schwab H]]
-[[Category: Steinkellner, G.]]
+[[Category: Schwamberger O]]
-[[Category: Winkler, C.]]
+[[Category: Steiner K]]
-[[Category: Cyclohexenone]]
+[[Category: Steinkellner G]]
-[[Category: Fmn-binding protein]]
+[[Category: Winkler C]]