1fdo: Difference between revisions

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{{STRUCTURE_1fdo|  PDB=1fdo  |  SCENE=  }}
===OXIDIZED FORM OF FORMATE DEHYDROGENASE H FROM E. COLI===
{{ABSTRACT_PUBMED_9036855}}


==Function==
==OXIDIZED FORM OF FORMATE DEHYDROGENASE H FROM E. COLI==
[[http://www.uniprot.org/uniprot/FDHF_ECOLI FDHF_ECOLI]] Decomposes formic acid to hydrogen and carbon dioxide under anaerobic conditions in the absence of exogenous electron acceptors.  
<StructureSection load='1fdo' size='340' side='right'caption='[[1fdo]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
 
== Structural highlights ==
==About this Structure==
<table><tr><td colspan='2'>[[1fdo]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FDO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1FDO FirstGlance]. <br>
[[1fdo]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FDO OCA].  
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=6MO:MOLYBDENUM(VI)+ION'>6MO</scene>, <scene name='pdbligand=MGD:2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE+GUANOSINE+DINUCLEOTIDE'>MGD</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1fdo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1fdo OCA], [https://pdbe.org/1fdo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1fdo RCSB], [https://www.ebi.ac.uk/pdbsum/1fdo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1fdo ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/FDHF_ECOLI FDHF_ECOLI] Decomposes formic acid to hydrogen and carbon dioxide under anaerobic conditions in the absence of exogenous electron acceptors.
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fd/1fdo_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1fdo ConSurf].
<div style="clear:both"></div>


==See Also==
==See Also==
*[[Formate dehydrogenase|Formate dehydrogenase]]
*[[Formate dehydrogenase 3D structures|Formate dehydrogenase 3D structures]]
 
*[[Non-Standard Residue|Non-Standard Residue]]
==Reference==
*[[Standard Residues|Standard Residues]]
<ref group="xtra">PMID:009036855</ref><references group="xtra"/><references/>
__TOC__
[[Category: Bacillus coli migula 1895]]
</StructureSection>
[[Category: Formate dehydrogenase]]
[[Category: Escherichia coli]]
[[Category: Boyington, J C.]]
[[Category: Large Structures]]
[[Category: Sun, P D.]]
[[Category: Boyington JC]]
[[Category: Anaerobic]]
[[Category: Sun PD]]
[[Category: Dehydrogenase]]
[[Category: Fe4s4]]
[[Category: Formate]]
[[Category: Iron sulfur cluster]]
[[Category: Mgd]]
[[Category: Molybdenum]]
[[Category: Molybdopterin]]
[[Category: Molybdopterin guanine dinucleotide]]
[[Category: Mpt]]
[[Category: Oxidoreductase]]
[[Category: Secy]]
[[Category: Selenium]]
[[Category: Selenocysteine]]

Latest revision as of 10:13, 7 February 2024

OXIDIZED FORM OF FORMATE DEHYDROGENASE H FROM E. COLIOXIDIZED FORM OF FORMATE DEHYDROGENASE H FROM E. COLI

Structural highlights

1fdo is a 1 chain structure with sequence from Escherichia coli. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.8Å
Ligands:, ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

FDHF_ECOLI Decomposes formic acid to hydrogen and carbon dioxide under anaerobic conditions in the absence of exogenous electron acceptors.

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

1fdo, resolution 2.80Å

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