4br4: Difference between revisions

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-{{STRUCTURE_4br4|  PDB=4br4  |  SCENE=  }}
-===Legionella pneumophila NTPDase1 crystal form I, open, apo===
-{{ABSTRACT_PUBMED_23830739}}
-==About this Structure==
+==Legionella pneumophila NTPDase1 crystal form I, open, apo==
-[[4br4]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_33152 Atcc 33152]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4BR4 OCA].
+<StructureSection load='4br4' size='340' side='right'caption='[[4br4]], [[Resolution|resolution]] 1.45&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[4br4]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Legionella_pneumophila Legionella pneumophila]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4BR4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4BR4 FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.45&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4br4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4br4 OCA], [https://pdbe.org/4br4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4br4 RCSB], [https://www.ebi.ac.uk/pdbsum/4br4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4br4 ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/Q5ZUA2_LEGPH Q5ZUA2_LEGPH]
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+In vertebrates, membrane-bound ecto-nucleoside triphosphate diphosphohydrolases (NTPDases) on the cell surface are responsible for signal conversion and termination in purinergic signaling by extracellular nucleotides. Here we present apo and complex structures of the rat NTPDase2 extracellular domain and Legionella pneumophila NTPDase1, including a high-resolution structure with a transition-state analog. Comparison of ATP and ADP binding modes shows how NTPDases engage the same catalytic site for hydrolysis of nucleoside triphosphates and diphosphates. We find that this dual specificity is achieved at the expense of base specificity. Structural and mutational studies indicate that a conserved active-site water is replaced by the phosphate product immediately after phosphoryl transfer. Partial base specificity for purines in LpNTPDase1 is based on a different intersubunit base binding site for pyrimidine bases. A comparison of the bacterial enzyme in six independent crystal forms shows that NTPDases can undergo a domain closure motion of at least 17 degrees .
-==Reference==
+Crystallographic Snapshots along the Reaction Pathway of Nucleoside Triphosphate Diphosphohydrolases.,Zebisch M, Krauss M, Schafer P, Lauble P, Strater N Structure. 2013 Jul 2. pii: S0969-2126(13)00200-1. doi:, 10.1016/j.str.2013.05.016. PMID:23830739<ref>PMID:23830739</ref>
-<ref group="xtra">PMID:023830739</ref><references group="xtra"/><references/>
-[[Category: Apyrase]]
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-[[Category: Atcc 33152]]
+</div>
-[[Category: Lauble, P.]]
+<div class="pdbe-citations 4br4" style="background-color:#fffaf0;"></div>
-[[Category: Schaefer, P.]]
-[[Category: Straeter, N.]]
+==See Also==
-[[Category: Zebisch, M.]]
+*[[Ectonucleoside triphosphate diphosphohydrolase|Ectonucleoside triphosphate diphosphohydrolase]]
-[[Category: Adpase]]
+== References ==
-[[Category: Apyrase]]
+<references/>
-[[Category: Atpase]]
+__TOC__
-[[Category: Cd39]]
+</StructureSection>
-[[Category: Domain rotation]]
+[[Category: Large Structures]]
-[[Category: Hydrolase]]
+[[Category: Legionella pneumophila]]
-[[Category: Ntpdase]]
+[[Category: Lauble P]]
-[[Category: Purinergic signalling]]
+[[Category: Schaefer P]]
-[[Category: Transition state]]
+[[Category: Straeter N]]
+[[Category: Zebisch M]]