2qzu: Difference between revisions

From Proteopedia
Jump to navigation Jump to search
← Older edit
No edit summary
No edit summary
 
(13 intermediate revisions by the same user not shown)
Line 1: Line 1:
[[Image:2qzu.jpg|left|200px]]<br /><applet load="2qzu" size="350" color="white" frame="true" align="right" spinBox="true"
caption="2qzu, resolution 1.70&Aring;" />
'''Crystal structure of the putative sulfatase yidJ from Bacteroides fragilis. Northeast Structural Genomics Consortium target BfR123'''<br />


==About this Structure==
==Crystal structure of the putative sulfatase yidJ from Bacteroides fragilis. Northeast Structural Genomics Consortium target BfR123==
2QZU is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Bacteroides_fragilis_ych46 Bacteroides fragilis ych46]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QZU OCA].  
<StructureSection load='2qzu' size='340' side='right'caption='[[2qzu]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
[[Category: Bacteroides fragilis ych46]]
== Structural highlights ==
[[Category: Single protein]]
<table><tr><td colspan='2'>[[2qzu]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacfr Bacfr]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QZU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2QZU FirstGlance]. <br>
[[Category: Abashidze, M.]]
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
[[Category: Acton, T B.]]
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1auk|1auk]], [[1hdh|1hdh]]</div></td></tr>
[[Category: Cunningham, K.]]
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BF0881 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=295405 BACFR])</td></tr>
[[Category: Hunt, J F.]]
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2qzu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qzu OCA], [https://pdbe.org/2qzu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2qzu RCSB], [https://www.ebi.ac.uk/pdbsum/2qzu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2qzu ProSAT], [https://www.topsan.org/Proteins/NESGC/2qzu TOPSAN]</span></td></tr>
[[Category: Maglaqui, M.]]
</table>
[[Category: Montelione, G T.]]
== Evolutionary Conservation ==
[[Category: NESG, Northeast Structural Genomics Consortium.]]
[[Image:Consurf_key_small.gif|200px|right]]
[[Category: Owens, L.]]
Check<jmol>
[[Category: Seetharaman, J.]]
  <jmolCheckbox>
[[Category: Tong, L.]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qz/2qzu_consurf.spt"</scriptWhenChecked>
[[Category: Vorobiev, S M.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Wang, D.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Xiao, R.]]
  </jmolCheckbox>
[[Category: arylsulfatase]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2qzu ConSurf].
[[Category: bfr123]]
<div style="clear:both"></div>
[[Category: hydrolase]]
__TOC__
[[Category: nesg]]
</StructureSection>
[[Category: northeast structural genomics consortium]]
[[Category: Bacfr]]
[[Category: protein structure initiative]]
[[Category: Large Structures]]
[[Category: psi-2]]
[[Category: Abashidze, M]]
[[Category: q64xz4_bacfr]]
[[Category: Acton, T B]]
[[Category: structural genomics]]
[[Category: Cunningham, K]]
[[Category: sulfatase]]
[[Category: Hunt, J F]]
[[Category: yidj]]
[[Category: Maglaqui, M]]
 
[[Category: Montelione, G T]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 18:43:32 2008''
[[Category: Structural genomic]]
[[Category: Owens, L]]
[[Category: Seetharaman, J]]
[[Category: Tong, L]]
[[Category: Vorobiev, S M]]
[[Category: Wang, D]]
[[Category: Xiao, R]]
[[Category: Arylsulfatase]]
[[Category: Bfr123]]
[[Category: Hydrolase]]
[[Category: Nesg]]
[[Category: PSI, Protein structure initiative]]
[[Category: Q64xz4_bacfr]]
[[Category: Sulfatase]]
[[Category: Yidj]]

Latest revision as of 07:10, 2 July 2021

Crystal structure of the putative sulfatase yidJ from Bacteroides fragilis. Northeast Structural Genomics Consortium target BfR123Crystal structure of the putative sulfatase yidJ from Bacteroides fragilis. Northeast Structural Genomics Consortium target BfR123

Structural highlights

2qzu is a 1 chain structure with sequence from Bacfr. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
NonStd Res:
Gene:BF0881 (BACFR)
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

2qzu, resolution 1.70Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
Retrieved from "https://proteopedia.openfox.io/wiki/index.php?title=2qzu&oldid=3419467"