2qrr: Difference between revisions

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-[[Image:2qrr.jpg|left|200px]]<br /><applet load="2qrr" size="350" color="white" frame="true" align="right" spinBox="true"
-caption="2qrr, resolution 1.71&Aring;" />
-'''Crystal structure of the soluble domain of the ABC transporter, ATP-binding protein from Vibrio parahaemolyticus'''<br />
-==About this Structure==
+==Crystal structure of the soluble domain of the ABC transporter, ATP-binding protein from Vibrio parahaemolyticus==
-QRR is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Vibrio_parahaemolyticus_rimd_2210633 Vibrio parahaemolyticus rimd 2210633] with <scene name='pdbligand=CL:'>CL</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QRR OCA].
+<StructureSection load='2qrr' size='340' side='right'caption='[[2qrr]], [[Resolution|resolution]] 1.71&Aring;' scene=''>
-[[Category: Single protein]]
+== Structural highlights ==
-[[Category: Vibrio parahaemolyticus rimd 2210633]]
+<table><tr><td colspan='2'>[[2qrr]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibpa Vibpa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QRR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2QRR FirstGlance]. <br>
-[[Category: Freeman, L.]]
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
-[[Category: Joachimiak, A.]]
+<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-[[Category: Kim, Y.]]
+<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">metN, VP0706 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=223926 VIBPA])</td></tr>
-[[Category: MCSG, Midwest Center for Structural Genomics.]]
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2qrr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qrr OCA], [https://pdbe.org/2qrr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2qrr RCSB], [https://www.ebi.ac.uk/pdbsum/2qrr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2qrr ProSAT], [https://www.topsan.org/Proteins/MCSG/2qrr TOPSAN]</span></td></tr>
-[[Category: Zhou, M.]]
+</table>
-[[Category: CL]]
+== Function ==
-[[Category: alpha-beta structure]]
+[[https://www.uniprot.org/uniprot/METN_VIBPA METN_VIBPA]] Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system (By similarity).
-[[Category: amino-acid transport]]
+== Evolutionary Conservation ==
-[[Category: atp-binding]]
+[[Image:Consurf_key_small.gif|200px|right]]
-[[Category: hydrolase]]
+Check<jmol>
-[[Category: inner membrane]]
+  <jmolCheckbox>
-[[Category: mcsg]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qr/2qrr_consurf.spt"</scriptWhenChecked>
-[[Category: membrane]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-[[Category: midwest center for structural genomics]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: nucleotide-binding]]
+  </jmolCheckbox>
-[[Category: protein structure initiative]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2qrr ConSurf].
-[[Category: psi-2]]
+<div style="clear:both"></div>
-[[Category: structural genomics]]
-[[Category: transport]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 18:41:44 2008''
+==See Also==
+*[[ABC transporter 3D structures|ABC transporter 3D structures]]
+*[[Endonuclease 3D structures|Endonuclease 3D structures]]
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
+[[Category: Vibpa]]
+[[Category: Freeman, L]]
+[[Category: Joachimiak, A]]
+[[Category: Kim, Y]]
+[[Category: Structural genomic]]
+[[Category: Zhou, M]]
+[[Category: Alpha-beta structure]]
+[[Category: Amino-acid transport]]
+[[Category: Atp-binding]]
+[[Category: Hydrolase]]
+[[Category: Inner membrane]]
+[[Category: Mcsg]]
+[[Category: Membrane]]
+[[Category: Nucleotide-binding]]
+[[Category: PSI, Protein structure initiative]]
+[[Category: Transport]]