2qgn: Difference between revisions

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-[[Image:2qgn.jpg|left|200px]]<br /><applet load="2qgn" size="350" color="white" frame="true" align="right" spinBox="true"
-caption="2qgn, resolution 2.40&Aring;" />
-'''Crystal structure of tRNA isopentenylpyrophosphate transferase (BH2366) from Bacillus halodurans, Northeast Structural Genomics Consortium target BhR41.'''<br />
-==About this Structure==
+==Crystal structure of tRNA isopentenylpyrophosphate transferase (BH2366) from Bacillus halodurans, Northeast Structural Genomics Consortium target BhR41.==
-QGN is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Bacteria Bacteria] with <scene name='pdbligand=SO4:'>SO4</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Active as [http://en.wikipedia.org/wiki/tRNA_isopentenyltransferase tRNA isopentenyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.5.1.8 2.5.1.8] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QGN OCA].
+<StructureSection load='2qgn' size='340' side='right'caption='[[2qgn]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
-[[Category: Bacteria]]
+== Structural highlights ==
-[[Category: Single protein]]
+<table><tr><td colspan='2'>[[2qgn]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bachd Bachd]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QGN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2QGN FirstGlance]. <br>
-[[Category: tRNA isopentenyltransferase]]
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-[[Category: Abashidze, M.]]
+<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-[[Category: Acton, T B.]]
+<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">miaA, BH2366 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272558 BACHD])</td></tr>
-[[Category: Baran, M C.]]
+<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/tRNA_dimethylallyltransferase tRNA dimethylallyltransferase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.5.1.75 2.5.1.75] </span></td></tr>
-[[Category: Cunningham, K.]]
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2qgn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qgn OCA], [https://pdbe.org/2qgn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2qgn RCSB], [https://www.ebi.ac.uk/pdbsum/2qgn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2qgn ProSAT]</span></td></tr>
-[[Category: Forouhar, F.]]
+</table>
-[[Category: Hunt, J F.]]
+== Function ==
-[[Category: Janjua, H.]]
+[[https://www.uniprot.org/uniprot/MIAA_BACHD MIAA_BACHD]] Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A).
-[[Category: Liu, J.]]
+== Evolutionary Conservation ==
-[[Category: Ma, L-C.]]
+[[Image:Consurf_key_small.gif|200px|right]]
-[[Category: Montelione, G T.]]
+Check<jmol>
-[[Category: NESG, Northeast Structural Genomics Consortium.]]
+  <jmolCheckbox>
-[[Category: Neely, H.]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qg/2qgn_consurf.spt"</scriptWhenChecked>
-[[Category: Rost, B.]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-[[Category: Seetharaman, J.]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: Shastry, R.]]
+  </jmolCheckbox>
-[[Category: Tong, L.]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2qgn ConSurf].
-[[Category: Xiao, R.]]
+<div style="clear:both"></div>
-[[Category: SO4]]
+__TOC__
-[[Category: alpha-beta protein]]
+</StructureSection>
-[[Category: nesg]]
+[[Category: Bachd]]
-[[Category: northeast structural genomics consortium]]
+[[Category: Large Structures]]
-[[Category: protein structure initiative]]
+[[Category: TRNA dimethylallyltransferase]]
-[[Category: psi-2]]
+[[Category: Abashidze, M]]
-[[Category: structural genomics]]
+[[Category: Acton, T B]]
+[[Category: Baran, M C]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 18:39:12 2008''
+[[Category: Cunningham, K]]
+[[Category: Forouhar, F]]
+[[Category: Hunt, J F]]
+[[Category: Janjua, H]]
+[[Category: Liu, J]]
+[[Category: Ma, L C]]
+[[Category: Montelione, G T]]
+[[Category: Structural genomic]]
+[[Category: Neely, H]]
+[[Category: Rost, B]]
+[[Category: Seetharaman, J]]
+[[Category: Shastry, R]]
+[[Category: Tong, L]]
+[[Category: Xiao, R]]
+[[Category: Alpha-beta protein]]
+[[Category: Nesg]]
+[[Category: PSI, Protein structure initiative]]
+[[Category: Transferase]]