2p3e: Difference between revisions

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[[Image:2p3e.gif|left|200px]]<br /><applet load="2p3e" size="350" color="white" frame="true" align="right" spinBox="true"
caption="2p3e, resolution 1.99&Aring;" />
'''Crystal structure of AQ1208 from Aquifex aeolicus'''<br />


==About this Structure==
==Crystal structure of AQ1208 from Aquifex aeolicus==
2P3E is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Active as [http://en.wikipedia.org/wiki/Diaminopimelate_decarboxylase Diaminopimelate decarboxylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.1.20 4.1.1.20] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P3E OCA].
<StructureSection load='2p3e' size='340' side='right'caption='[[2p3e]], [[Resolution|resolution]] 1.99&Aring;' scene=''>
[[Category: Aquifex aeolicus]]
== Structural highlights ==
[[Category: Diaminopimelate decarboxylase]]
<table><tr><td colspan='2'>[[2p3e]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Aquifex_aeolicus_VF5 Aquifex aeolicus VF5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P3E OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2P3E FirstGlance]. <br>
[[Category: Single protein]]
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.99&#8491;</td></tr>
[[Category: Chen, L.]]
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2p3e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p3e OCA], [https://pdbe.org/2p3e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2p3e RCSB], [https://www.ebi.ac.uk/pdbsum/2p3e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2p3e ProSAT], [https://www.topsan.org/Proteins/RSGI/2p3e TOPSAN]</span></td></tr>
[[Category: Ebihara, A.]]
</table>
[[Category: Fu, Z-Q.]]
== Function ==
[[Category: II, J T.Swindell.]]
[https://www.uniprot.org/uniprot/DCDA_AQUAE DCDA_AQUAE] Specifically catalyzes the decarboxylation of meso-diaminopimelate (meso-DAP) to L-lysine (By similarity).[HAMAP-Rule:MF_02120]
[[Category: Kuramitsu, S.]]
== Evolutionary Conservation ==
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
[[Image:Consurf_key_small.gif|200px|right]]
[[Category: Rose, J P.]]
Check<jmol>
[[Category: SECSG, Southeast Collaboratory for Structural Genomics.]]
  <jmolCheckbox>
[[Category: Shinkai, A.]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/p3/2p3e_consurf.spt"</scriptWhenChecked>
[[Category: Wang, B-C.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Yokoyama, S.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Zhu, J.]]
  </jmolCheckbox>
[[Category: aq1208]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2p3e ConSurf].
[[Category: aquifex aeolicus]]
<div style="clear:both"></div>
[[Category: department of biological sciences osaka university]]
__TOC__
[[Category: department of biophysics and biochemistry university of tokyo]]
</StructureSection>
[[Category: protein structure initiative]]
[[Category: Aquifex aeolicus VF5]]
[[Category: psi]]
[[Category: Large Structures]]
[[Category: riken genomic sciences center]]
[[Category: Chen L]]
[[Category: riken spring-8 center]]
[[Category: Ebihara A]]
[[Category: riken structural genomics/proteomics initiative]]
[[Category: Fu Z-Q]]
[[Category: rsgi]]
[[Category: Kuramitsu S]]
[[Category: secsg]]
[[Category: Rose JP]]
[[Category: southeast collaboratory for structural genomics]]
[[Category: Shinkai A]]
 
[[Category: Swindell II JT]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 18:25:26 2008''
[[Category: Wang B-C]]
[[Category: Yokoyama S]]
[[Category: Zhu J]]

Latest revision as of 13:53, 30 August 2023

Crystal structure of AQ1208 from Aquifex aeolicusCrystal structure of AQ1208 from Aquifex aeolicus

Structural highlights

2p3e is a 2 chain structure with sequence from Aquifex aeolicus VF5. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.99Å
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

DCDA_AQUAE Specifically catalyzes the decarboxylation of meso-diaminopimelate (meso-DAP) to L-lysine (By similarity).[HAMAP-Rule:MF_02120]

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

2p3e, resolution 1.99Å

Drag the structure with the mouse to rotate

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OCA
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