4b5n: Difference between revisions

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-{{STRUCTURE_4b5n|  PDB=4b5n  |  SCENE=  }}
-===Crystal structure of oxidized Shewanella Yellow Enzyme 4 (SYE4)===
-==About this Structure==
+==Crystal structure of oxidized Shewanella Yellow Enzyme 4 (SYE4)==
-[[4b5n]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Shewanella_oneidensis_mr-1 Shewanella oneidensis mr-1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4B5N OCA].
+<StructureSection load='4b5n' size='340' side='right'caption='[[4b5n]], [[Resolution|resolution]] 1.10&Aring;' scene=''>
-[[Category: NADPH dehydrogenase]]
+== Structural highlights ==
-[[Category: Shewanella oneidensis mr-1]]
+<table><tr><td colspan='2'>[[4b5n]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Shewanella_oneidensis_MR-1 Shewanella oneidensis MR-1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4B5N OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4B5N FirstGlance]. <br>
-[[Category: Brige, A.]]
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.1&#8491;</td></tr>
-[[Category: Elegheert, J.]]
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=8K6:OCTADECANE'>8K6</scene>, <scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene></td></tr>
-[[Category: Savvides, S N.]]
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4b5n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4b5n OCA], [https://pdbe.org/4b5n PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4b5n RCSB], [https://www.ebi.ac.uk/pdbsum/4b5n PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4b5n ProSAT]</span></td></tr>
-[[Category: Cofactor-binding]]
+</table>
-[[Category: Oxidoreductase]]
+== Function ==
+[https://www.uniprot.org/uniprot/Q8EBV3_SHEON Q8EBV3_SHEON]
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+Shewanella oneidensis, a Gram-negative gamma-proteobacterium with an extensive redox capacity, possesses four old yellow enzyme (OYE) homologs. Of these, Shewanella yellow enzyme 4 (SYE4) is implicated in resistance to oxidative stress. Here, we present a series of high-resolution crystal structures for SYE4 in the oxidized and reduced states, and in complex with phenolic ligands and the nitro-aromatic explosive picric acid. The structures unmask new features, including the identification of a binding platform for long-chain hydrophobic molecules. Furthermore, we present the first structural observation of a hydride-Meisenheimer complex of picric acid with a flavoenzyme. Overall, our study exposes the binding promiscuity of SYE4 toward a variety of electrophilic substrates and is consistent with a general detoxification function for SYE4.
+Structural dissection of Shewanella oneidensis old yellow enzyme 4 bound to a Meisenheimer complex and (nitro)phenolic ligands.,Elegheert J, Brige A, Van Beeumen J, Savvides SN FEBS Lett. 2017 Sep 4. doi: 10.1002/1873-3468.12833. PMID:28869767<ref>PMID:28869767</ref>
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+</div>
+<div class="pdbe-citations 4b5n" style="background-color:#fffaf0;"></div>
+==See Also==
+*[[NADPH dehydrogenase|NADPH dehydrogenase]]
+== References ==
+<references/>
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
+[[Category: Shewanella oneidensis MR-1]]
+[[Category: Brige A]]
+[[Category: Elegheert J]]
+[[Category: Savvides SN]]