2hz7: Difference between revisions

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-[[Image:2hz7.gif|left|200px]]<br /><applet load="2hz7" size="350" color="white" frame="true" align="right" spinBox="true"
-caption="2hz7, resolution 2.30&Aring;" />
-'''Crystal structure of the Glutaminyl-tRNA synthetase from Deinococcus radiodurans'''<br />
-==Overview==
+==Crystal structure of the Glutaminyl-tRNA synthetase from Deinococcus radiodurans==
+<StructureSection load='2hz7' size='340' side='right'caption='[[2hz7]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[2hz7]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Deinococcus_radiodurans Deinococcus radiodurans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HZ7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2HZ7 FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2hz7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2hz7 OCA], [https://pdbe.org/2hz7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2hz7 RCSB], [https://www.ebi.ac.uk/pdbsum/2hz7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2hz7 ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/SYQ_DEIRA SYQ_DEIRA]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hz/2hz7_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2hz7 ConSurf].
+<div style="clear:both"></div>
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
 Glutaminyl-tRNA synthetase from Deinococcus radiodurans possesses a C-terminal extension of 215 residues appending the anticodon-binding domain. This domain constitutes a paralog of the Yqey protein present in various organisms and part of it is present in the C-terminal end of the GatB subunit of GatCAB, a partner of the indirect pathway of Gln-tRNA(Gln) formation. To analyze the peculiarities of the structure-function relationship of this GlnRS related to the Yqey domain, a structure of the protein was solved from crystals diffracting at 2.3 A and a docking model of the synthetase complexed to tRNA(Gln) constructed. The comparison of the modeled complex with the structure of the E. coli complex reveals that all residues of E. coli GlnRS contacting tRNA(Gln) are conserved in D. radiodurans GlnRS, leaving the functional role of the Yqey domain puzzling. Kinetic investigations and tRNA-binding experiments of full length and Yqey-truncated GlnRSs reveal that the Yqey domain is involved in tRNA(Gln) recognition. They demonstrate that Yqey plays the role of an affinity-enhancer of GlnRS for tRNA(Gln) acting only in cis. However, the presence of Yqey in free state in organisms lacking GlnRS, suggests that this domain may exert additional cellular functions.
-==About this Structure==
+Deinococcus glutaminyl-tRNA synthetase is a chimer between proteins from an ancient and the modern pathways of aminoacyl-tRNA formation.,Deniziak M, Sauter C, Becker HD, Paulus CA, Giege R, Kern D Nucleic Acids Res. 2007;35(5):1421-31. Epub 2007 Feb 6. PMID:17284460<ref>PMID:17284460</ref>
-HZ7 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Deinococcus_radiodurans Deinococcus radiodurans]. Active as [http://en.wikipedia.org/wiki/Glutamine--tRNA_ligase Glutamine--tRNA ligase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.1.1.18 6.1.1.18] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HZ7 OCA].
-==Reference==
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-Deinococcus glutaminyl-tRNA synthetase is a chimer between proteins from an ancient and the modern pathways of aminoacyl-tRNA formation., Deniziak M, Sauter C, Becker HD, Paulus CA, Giege R, Kern D, Nucleic Acids Res. 2007;35(5):1421-31. Epub 2007 Feb 6. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=17284460 17284460]
+</div>
+<div class="pdbe-citations 2hz7" style="background-color:#fffaf0;"></div>
+==See Also==
+*[[Aminoacyl tRNA synthetase 3D structures|Aminoacyl tRNA synthetase 3D structures]]
+== References ==
+<references/>
+__TOC__
+</StructureSection>
 [[Category: Deinococcus radiodurans]]
-[[Category: Glutamine--tRNA ligase]]
+[[Category: Large Structures]]
-[[Category: Single protein]]
+[[Category: Becker HD]]
-[[Category: Becker, H D.]]
+[[Category: Deniziak M]]
-[[Category: Deniziak, M.]]
+[[Category: Giege R]]
-[[Category: Giege, R.]]
+[[Category: Kern D]]
-[[Category: Kern, D.]]
+[[Category: Paulus C]]
-[[Category: Paulus, C.]]
+[[Category: Sauter C]]
-[[Category: Sauter, C.]]
-[[Category: class i aminoacyl-trna synthetase]]
-[[Category: glnrs core]]
-[[Category: rossmann fold]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 17:47:22 2008''