Sandbox Reserved 3: Difference between revisions

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{{Template:Sandbox Reserved Eric Martz}}
{{Template:Sandbox Reserved Eric Martz}}
<!-- INSERT YOUR SCENES AND TEXT BELOW THIS LINE -->
<!-- INSERT YOUR SCENES AND TEXT BELOW THIS LINE -->
<Structure load='1jpa' size='500' frame='true' align='right' caption='Insert caption here' scene='Insert optional scene name here' />


#<scene name='Sandbox_Reserved_3/1jpa_chage/1'>The surface of the 1jpa</scene> No patches of all positive or all negative charges
== This page is about 2gp5. ==
#<scene name='Sandbox_Reserved_3/1jpa_conserve/6'>Gly636 is highly conserved</scene>because it locate at ligand binding site.
<Structure load='2gp5' size='350' frame='true' align='right' caption='Insert caption here' scene='Insert optional scene name here' />
 
<scene name='54/545856/Charge/2'>2gp5 has no patches of all positive or all negative charges.</scene>(<font color="blue">positive charges</font> are <font color="blue">blue</font>, <font color="red">negative charges</font> are <font color="red">red</font>).
 
This protein is shown as <scene name='54/545856/Rainbow/1'>smooth backbone trace.</scene> (<font color="blue">Amino (N) termini</font> of proteins are <font color="blue">blue</font>. <font color="red">Carboxy (C) termini</font> of proteins are <font color="red">red</font>. Between termini, colors follow a spectral rainbow sequence. )
 
<scene name='54/545856/B_factor/1'>Local Uncertainty</scene><br>
Each atom is colored by the absolute uncertainty of its position ('''temperature, B factor''').(The positions of <font color="red">Red atoms</font> have <font color="red">the highest uncertainty</font>, while those of <font color="blue">blue atoms</font> have <font color="blue">the greatest certainty</font>.)
 
<scene name='54/545856/Evolutionary/1'>Evolutionary Conservation</scene><br>
There are many <font color="#20B2AA">variable residues</font> on the surface, while  residues on the inside are <font color="#8B0000">highly conserved</font>.

Latest revision as of 13:20, 23 May 2015

This Sandbox is Reserved from May 10, 2015, through July 31, 2015 for use by the class Protein 3D Structure Visualization & Structural Bioinformatics taught by Eric Martz and Keiichi Namba at Osaka University, Japan. This reservation includes Sandbox Reserved 1 through Sandbox Reserved 10. Syllabus.
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This page is about 2gp5.This page is about 2gp5.

Insert caption here

Drag the structure with the mouse to rotate

(positive charges are blue, negative charges are red).

This protein is shown as (Amino (N) termini of proteins are blue. Carboxy (C) termini of proteins are red. Between termini, colors follow a spectral rainbow sequence. )


Each atom is colored by the absolute uncertainty of its position (temperature, B factor).(The positions of Red atoms have the highest uncertainty, while those of blue atoms have the greatest certainty.)


There are many variable residues on the surface, while residues on the inside are highly conserved.

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

Eric Martz, Student
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