Proteopedia

2g3s: Difference between revisions

← Older edit
No edit summary
No edit summary
 
(12 intermediate revisions by the same user not shown)
Line 1: Line 1:
[[Image:2g3s.gif|left|200px]]<br /><applet load="2g3s" size="350" color="white" frame="true" align="right" spinBox="true"
caption="2g3s, resolution 1.499&Aring;" />
'''RNA structure containing GU base pairs'''<br />


==Overview==
==RNA structure containing GU base pairs==
<StructureSection load='2g3s' size='340' side='right'caption='[[2g3s]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[2g3s]] is a 10 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2G3S OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2G3S FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.499&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2g3s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2g3s OCA], [https://pdbe.org/2g3s PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2g3s RCSB], [https://www.ebi.ac.uk/pdbsum/2g3s PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2g3s ProSAT]</span></td></tr>
</table>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
The crystal structure of the RNA octamer, 5'-GGCGUGCC-3' has been determined from x-ray diffraction data to 1.5 angstroms resolution. In the crystal, this oligonucleotide forms five self-complementary double-helices in the asymmetric unit. Tandem 5'GU/3'UG basepairs comprise an internal loop in the middle of each duplex. The NMR structure of this octameric RNA sequence is also known, allowing comparison of the variation among the five crystallographic duplexes and the solution structure. The G.U pairs in the five duplexes of the crystal form two direct hydrogen bonds and are stabilized by water molecules that bridge between the base of guanine (N2) and the sugar (O2') of uracil. This contrasts with the NMR structure in which only one direct hydrogen bond is observed for the G.U pairs. The reduced stability of the r(CGUG)2 motif relative to the r(GGUC)2 motif may be explained by the lack of stacking of the uracil bases between the Watson-Crick and G.U pairs as observed in the crystal structure.
The crystal structure of the RNA octamer, 5'-GGCGUGCC-3' has been determined from x-ray diffraction data to 1.5 angstroms resolution. In the crystal, this oligonucleotide forms five self-complementary double-helices in the asymmetric unit. Tandem 5'GU/3'UG basepairs comprise an internal loop in the middle of each duplex. The NMR structure of this octameric RNA sequence is also known, allowing comparison of the variation among the five crystallographic duplexes and the solution structure. The G.U pairs in the five duplexes of the crystal form two direct hydrogen bonds and are stabilized by water molecules that bridge between the base of guanine (N2) and the sugar (O2') of uracil. This contrasts with the NMR structure in which only one direct hydrogen bond is observed for the G.U pairs. The reduced stability of the r(CGUG)2 motif relative to the r(GGUC)2 motif may be explained by the lack of stacking of the uracil bases between the Watson-Crick and G.U pairs as observed in the crystal structure.


==About this Structure==
The crystal structure at 1.5 angstroms resolution of an RNA octamer duplex containing tandem G.U basepairs.,Jang SB, Hung LW, Jeong MS, Holbrook EL, Chen X, Turner DH, Holbrook SR Biophys J. 2006 Jun 15;90(12):4530-7. Epub 2006 Mar 31. PMID:16581850<ref>PMID:16581850</ref>
2G3S is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/ ] with <scene name='pdbligand=MG:'>MG</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2G3S OCA].


==Reference==
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
The crystal structure at 1.5 angstroms resolution of an RNA octamer duplex containing tandem G.U basepairs., Jang SB, Hung LW, Jeong MS, Holbrook EL, Chen X, Turner DH, Holbrook SR, Biophys J. 2006 Jun 15;90(12):4530-7. Epub 2006 Mar 31. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=16581850 16581850]
</div>
[[Category: Protein complex]]
<div class="pdbe-citations 2g3s" style="background-color:#fffaf0;"></div>
[[Category: Chen, X.]]
== References ==
[[Category: Holbrook, E L.]]
<references/>
[[Category: Holbrook, S R.]]
__TOC__
[[Category: Hung, L W.]]
</StructureSection>
[[Category: Jang, S B.]]
[[Category: Large Structures]]
[[Category: Jeong, M S.]]
[[Category: Chen X]]
[[Category: Turner, D H.]]
[[Category: Holbrook EL]]
[[Category: MG]]
[[Category: Holbrook SR]]
[[Category: rna crystal structure]]
[[Category: Hung LW]]
[[Category: tandem gu base pairs]]
[[Category: Jang SB]]
 
[[Category: Jeong MS]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 17:27:48 2008''
[[Category: Turner DH]]

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
Retrieved from "https://proteopedia.openfox.io/w/2g3s"