3mdk: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-{{STRUCTURE_3mdk|  PDB=3mdk  |  SCENE=  }}
-===Structure of stringent starvation protein A (sspA) from Pseudomonas putida===
-==About this Structure==
+==Structure of stringent starvation protein A (sspA) from Pseudomonas putida==
-[[3mdk]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_putida Pseudomonas putida]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MDK OCA].
+<StructureSection load='3mdk' size='340' side='right'caption='[[3mdk]], [[Resolution|resolution]] 1.85&Aring;' scene=''>
-[[Category: Pseudomonas putida]]
+== Structural highlights ==
-[[Category: Almo, S C.]]
+<table><tr><td colspan='2'>[[3mdk]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_putida_KT2440 Pseudomonas putida KT2440]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MDK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3MDK FirstGlance]. <br>
-[[Category: Burley, S K.]]
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.85&#8491;</td></tr>
-[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-[[Category: Ramagopal, U A.]]
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3mdk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3mdk OCA], [https://pdbe.org/3mdk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3mdk RCSB], [https://www.ebi.ac.uk/pdbsum/3mdk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3mdk ProSAT]</span></td></tr>
-[[Category: Toro, R.]]
+</table>
-[[Category: Gst-superfamily]]
+== Function ==
-[[Category: New york sgx research center for structural genomic]]
+[https://www.uniprot.org/uniprot/Q88N92_PSEPK Q88N92_PSEPK]
-[[Category: Nysgxrc]]
+== Evolutionary Conservation ==
-[[Category: Protein structure initiative]]
+[[Image:Consurf_key_small.gif|200px|right]]
-[[Category: Psi-2]]
+Check<jmol>
-[[Category: Sspa]]
+  <jmolCheckbox>
-[[Category: Structural genomic]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/md/3mdk_consurf.spt"</scriptWhenChecked>
-[[Category: Transcriptional regulator]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3mdk ConSurf].
+<div style="clear:both"></div>
+==See Also==
+*[[Stringent starvation protein 3D structures|Stringent starvation protein 3D structures]]
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
+[[Category: Pseudomonas putida KT2440]]
+[[Category: Almo SC]]
+[[Category: Burley SK]]
+[[Category: Ramagopal UA]]
+[[Category: Toro R]]