2dei: Difference between revisions

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-[[Image:2dei.jpg|left|200px]]<br /><applet load="2dei" size="350" color="white" frame="true" align="right" spinBox="true"
-caption="2dei, resolution 1.70&Aring;" />
-'''Crystal Structure of galaktokinase from Pyrococcus horikoshii with AMP-PNP and galactose'''<br />
-==About this Structure==
+==Crystal Structure of galaktokinase from Pyrococcus horikoshii with AMP-PNP and galactose==
-DEI is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii] with <scene name='pdbligand=GLA:'>GLA</scene> and <scene name='pdbligand=MAP:'>MAP</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Galactokinase Galactokinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.6 2.7.1.6] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DEI OCA].
+<StructureSection load='2dei' size='340' side='right'caption='[[2dei]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
-[[Category: Galactokinase]]
+== Structural highlights ==
+<table><tr><td colspan='2'>[[2dei]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DEI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DEI FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GLA:ALPHA+D-GALACTOSE'>GLA</scene>, <scene name='pdbligand=MAP:MAGNESIUM-5-ADENYLY-IMIDO-TRIPHOSPHATE'>MAP</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dei FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dei OCA], [https://pdbe.org/2dei PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dei RCSB], [https://www.ebi.ac.uk/pdbsum/2dei PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dei ProSAT], [https://www.topsan.org/Proteins/RSGI/2dei TOPSAN]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/GAL1_PYRHO GAL1_PYRHO] Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P).<ref>PMID:16511293</ref>
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/de/2dei_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dei ConSurf].
+<div style="clear:both"></div>
+==See Also==
+*[[Galactokinase|Galactokinase]]
+== References ==
+<references/>
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
 [[Category: Pyrococcus horikoshii]]
-[[Category: Single protein]]
+[[Category: Inagaki E]]
-[[Category: Inagaki, E.]]
+[[Category: Sakamoto K]]
-[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+[[Category: Shinkai A]]
-[[Category: Sakamoto, K.]]
+[[Category: Yokoyama S]]
-[[Category: Shinkai, A.]]
-[[Category: Yokoyama, S.]]
-[[Category: GLA]]
-[[Category: MAP]]
-[[Category: atp analogue]]
-[[Category: galactokinase]]
-[[Category: galactose]]
-[[Category: national project on protein structural and functional analyses]]
-[[Category: nppsfa]]
-[[Category: riken structural genomics/proteomics initiative]]
-[[Category: rsgi]]
-[[Category: structural genomics]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 16:57:59 2008''