3d8u: Difference between revisions

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[[Image:3d8u.png|left|200px]]


{{STRUCTURE_3d8u|  PDB=3d8u  |  SCENE=  }}
==The crystal structure of a PurR family transcriptional regulator from Vibrio parahaemolyticus RIMD 2210633==
 
<StructureSection load='3d8u' size='340' side='right'caption='[[3d8u]], [[Resolution|resolution]] 2.88&Aring;' scene=''>
===The crystal structure of a PurR family transcriptional regulator from Vibrio parahaemolyticus RIMD 2210633===
== Structural highlights ==
 
<table><tr><td colspan='2'>[[3d8u]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_parahaemolyticus Vibrio parahaemolyticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D8U OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3D8U FirstGlance]. <br>
 
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.88&#8491;</td></tr>
==About this Structure==
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
[[3d8u]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Vibrio_parahaemolyticus Vibrio parahaemolyticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D8U OCA].  
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3d8u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d8u OCA], [https://pdbe.org/3d8u PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3d8u RCSB], [https://www.ebi.ac.uk/pdbsum/3d8u PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3d8u ProSAT], [https://www.topsan.org/Proteins/MCSG/3d8u TOPSAN]</span></td></tr>
</table>
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d8/3d8u_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3d8u ConSurf].
<div style="clear:both"></div>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Vibrio parahaemolyticus]]
[[Category: Vibrio parahaemolyticus]]
[[Category: Hatzos, C.]]
[[Category: Hatzos C]]
[[Category: Joachimiak, A.]]
[[Category: Joachimiak A]]
[[Category: MCSG, Midwest Center for Structural Genomics.]]
[[Category: Moy S]]
[[Category: Moy, S.]]
[[Category: Tan K]]
[[Category: Tan, K.]]
[[Category: Apc91343 1]]
[[Category: Dna-binding]]
[[Category: Mcsg]]
[[Category: Midwest center for structural genomic]]
[[Category: Protein structure initiative]]
[[Category: Psi-2]]
[[Category: Purr]]
[[Category: Structural genomic]]
[[Category: Transcription]]
[[Category: Transcription regulation]]
[[Category: Transcription regulator]]
[[Category: Transcriptional regulator]]
[[Category: Vibrio parahaemolyticus rimd 2210633]]

Latest revision as of 04:42, 21 November 2024

The crystal structure of a PurR family transcriptional regulator from Vibrio parahaemolyticus RIMD 2210633The crystal structure of a PurR family transcriptional regulator from Vibrio parahaemolyticus RIMD 2210633

Structural highlights

3d8u is a 2 chain structure with sequence from Vibrio parahaemolyticus. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.88Å
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

3d8u, resolution 2.88Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
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