3div: Difference between revisions

From Proteopedia
Jump to navigation Jump to search
← Older edit
No edit summary
No edit summary
 
(7 intermediate revisions by the same user not shown)
Line 1: Line 1:
[[Image:3div.png|left|200px]]


{{STRUCTURE_3div|  PDB=3div  |  SCENE=  }}
==Crystal structure of laccase from Cerrena maxima at 1.76A resolution==
 
<StructureSection load='3div' size='340' side='right'caption='[[3div]], [[Resolution|resolution]] 1.76&Aring;' scene=''>
===Crystal structure of laccase from Cerrena maxima at 1.76A resolution===
== Structural highlights ==
 
<table><tr><td colspan='2'>[[3div]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Cerrena Cerrena]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DIV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DIV FirstGlance]. <br>
 
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.76&#8491;</td></tr>
==About this Structure==
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=NIY:META-NITRO-TYROSINE'>NIY</scene>, <scene name='pdbligand=PRD_900112:3alpha-alpha-mannobiose'>PRD_900112</scene></td></tr>
[[3div]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Cerrena Cerrena]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DIV OCA].  
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3div FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3div OCA], [https://pdbe.org/3div PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3div RCSB], [https://www.ebi.ac.uk/pdbsum/3div PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3div ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/LAC1_TRAMX LAC1_TRAMX] Lignin degradation and detoxification of lignin-derived products.<ref>PMID:16944230</ref> <ref>PMID:17012782</ref>
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/di/3div_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3div ConSurf].
<div style="clear:both"></div>


==See Also==
==See Also==
*[[Nitrotyrosine|Nitrotyrosine]]
*[[Laccase 3D structures|Laccase 3D structures]]
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Cerrena]]
[[Category: Cerrena]]
[[Category: Laccase]]
[[Category: Large Structures]]
[[Category: Lyashenko, A V.]]
[[Category: Lyashenko AV]]
[[Category: Mikhailov, A M.]]
[[Category: Mikhailov AM]]
[[Category: Zhukova, Y N.]]
[[Category: Zhukova YN]]
[[Category: Laccase from cerrena maxima]]
[[Category: Multicopper-oxidase]]
[[Category: Oxidoreductase]]
[[Category: X-ray analysis]]

Latest revision as of 18:09, 1 November 2023

Crystal structure of laccase from Cerrena maxima at 1.76A resolutionCrystal structure of laccase from Cerrena maxima at 1.76A resolution

Structural highlights

3div is a 1 chain structure with sequence from Cerrena. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.76Å
Ligands:, , , , ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

LAC1_TRAMX Lignin degradation and detoxification of lignin-derived products.[1] [2]

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

References

  1. ↑ Lyashenko AV, Bento I, Zaitsev VN, Zhukhlistova NE, Zhukova YN, Gabdoulkhakov AG, Morgunova EY, Voelter W, Kachalova GS, Stepanova EV, Koroleva OV, Lamzin VS, Tishkov VI, Betzel C, Lindley PF, Mikhailov AM. X-ray structural studies of the fungal laccase from Cerrena maxima. J Biol Inorg Chem. 2006 Nov;11(8):963-73. PMID:16944230 doi:10.1007/s00775-006-0158-x
  2. ↑ Lyashenko AV, Zhukhlistova NE, Gabdoulkhakov AG, Zhukova YN, Voelter W, Zaitsev VN, Bento I, Stepanova EV, Kachalova GS, Koroleva OV, Cherkashyn EA, Tishkov VI, Lamzin VS, Schirwitz K, Morgunova EY, Betzel C, Lindley PF, Mikhailov AM. Purification, crystallization and preliminary X-ray study of the fungal laccase from Cerrena maxima. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2006 Oct 1;62(Pt, 10):954-7. Epub 2006 Sep 19. PMID:17012782 doi:10.1107/S1744309106036578

3div, resolution 1.76Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
Retrieved from "https://proteopedia.openfox.io/wiki/index.php?title=3div&oldid=3932457"