2yyh: Difference between revisions

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-[[Image:2yyh.png|left|200px]]
-{{STRUCTURE_2yyh|  PDB=2yyh  |  SCENE=  }}
+==Crystal structure of Nudix family protein from Aquifex aeolicus==
+<StructureSection load='2yyh' size='340' side='right'caption='[[2yyh]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-===Crystal structure of Nudix family protein from Aquifex aeolicus===
+== Structural highlights ==
+<table><tr><td colspan='2'>[[2yyh]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Aquae Aquae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YYH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YYH FirstGlance]. <br>
+</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-==About this Structure==
+<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">mutT ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=224324 AQUAE])</td></tr>
-[[2yyh]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YYH OCA].
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2yyh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yyh OCA], [https://pdbe.org/2yyh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2yyh RCSB], [https://www.ebi.ac.uk/pdbsum/2yyh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2yyh ProSAT], [https://www.topsan.org/Proteins/RSGI/2yyh TOPSAN]</span></td></tr>
-[[Category: Aquifex aeolicus]]
+</table>
-[[Category: Kishishita, S.]]
+== Evolutionary Conservation ==
-[[Category: Kuramitsu, S.]]
+[[Image:Consurf_key_small.gif|200px|right]]
-[[Category: Nakagawa, N.]]
+Check<jmol>
-[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+  <jmolCheckbox>
-[[Category: Yokoyama, S.]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yy/2yyh_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2yyh ConSurf].
+<div style="clear:both"></div>
+__TOC__
+</StructureSection>
+[[Category: Aquae]]
+[[Category: Large Structures]]
+[[Category: Kishishita, S]]
+[[Category: Kuramitsu, S]]
+[[Category: Nakagawa, N]]
+[[Category: Structural genomic]]
+[[Category: Yokoyama, S]]
 [[Category: Hydrolase]]
 [[Category: National project on protein structural and functional analyse]]
 [[Category: Nppsfa]]
 [[Category: Nudix family protein]]
-[[Category: Riken structural genomics/proteomics initiative]]
 [[Category: Rsgi]]
-[[Category: Structural genomic]]