3af5: Difference between revisions

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[[Image:3af5.png|left|200px]]


{{STRUCTURE_3af5|  PDB=3af5  |  SCENE=  }}
==The crystal structure of an archaeal CPSF subunit, PH1404 from Pyrococcus horikoshii==
 
<StructureSection load='3af5' size='340' side='right'caption='[[3af5]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
===The crystal structure of an archaeal CPSF subunit, PH1404 from Pyrococcus horikoshii===
== Structural highlights ==
 
<table><tr><td colspan='2'>[[3af5]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii_OT3 Pyrococcus horikoshii OT3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AF5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3AF5 FirstGlance]. <br>
 
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6&#8491;</td></tr>
==About this Structure==
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
[[3af5]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AF5 OCA].  
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3af5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3af5 OCA], [https://pdbe.org/3af5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3af5 RCSB], [https://www.ebi.ac.uk/pdbsum/3af5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3af5 ProSAT]</span></td></tr>
 
</table>
==Reference==
== Function ==
<ref group="xtra">PMID:020544974</ref><references group="xtra"/>
[https://www.uniprot.org/uniprot/O50112_PYRHO O50112_PYRHO]  
[[Category: Pyrococcus horikoshii]]
== Evolutionary Conservation ==
[[Category: Ishikawa, H.]]
[[Image:Consurf_key_small.gif|200px|right]]
[[Category: Kuramitsu, S.]]
Check<jmol>
[[Category: Masui, R.]]
  <jmolCheckbox>
[[Category: Nakagawa, N.]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/af/3af5_consurf.spt"</scriptWhenChecked>
[[Category: Nishida, Y.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Archaea]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Archaeal cpsf]]
  </jmolCheckbox>
[[Category: Beta-casp family]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3af5 ConSurf].
[[Category: Hydrolase]]
<div style="clear:both"></div>
[[Category: Kh domain]]
__TOC__
[[Category: Metallo-beta-lactamase superfamily]]
</StructureSection>
[[Category: Pyrococcus horikoshii]]
[[Category: Large Structures]]
[[Category: Ribonuclease]]
[[Category: Pyrococcus horikoshii OT3]]
[[Category: Ishikawa H]]
[[Category: Kuramitsu S]]
[[Category: Masui R]]
[[Category: Nakagawa N]]
[[Category: Nishida Y]]

Latest revision as of 17:00, 13 March 2024

The crystal structure of an archaeal CPSF subunit, PH1404 from Pyrococcus horikoshiiThe crystal structure of an archaeal CPSF subunit, PH1404 from Pyrococcus horikoshii

Structural highlights

3af5 is a 1 chain structure with sequence from Pyrococcus horikoshii OT3. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.6Å
Ligands:, ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

O50112_PYRHO

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

3af5, resolution 2.60Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA