2pgo: Difference between revisions

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[[Image:2pgo.png|left|200px]]


{{STRUCTURE_2pgo|  PDB=2pgo  |  SCENE=  }}
==The crystal structure of FAD and ThDP dependent Cyclohexane-1,2-dione Hydrolase (Cdh) from Azoarcus sp. strain 22Lin==
 
<StructureSection load='2pgo' size='340' side='right'caption='[[2pgo]], [[Resolution|resolution]] 1.26&Aring;' scene=''>
===The crystal structure of FAD and ThDP dependent Cyclohexane-1,2-dione Hydrolase (Cdh) from Azoarcus sp. strain 22Lin===
== Structural highlights ==
 
<table><tr><td colspan='2'>[[2pgo]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Aromatoleum_diolicum Aromatoleum diolicum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PGO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PGO FirstGlance]. <br>
{{ABSTRACT_PUBMED_022309255}}
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.26&#8491;</td></tr>
 
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=TPP:THIAMINE+DIPHOSPHATE'>TPP</scene></td></tr>
==About this Structure==
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pgo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pgo OCA], [https://pdbe.org/2pgo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pgo RCSB], [https://www.ebi.ac.uk/pdbsum/2pgo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pgo ProSAT]</span></td></tr>
[[2pgo]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Azoarcus_sp. Azoarcus sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PGO OCA].  
</table>
[[Category: Azoarcus sp.]]
== Evolutionary Conservation ==
[[Category: Ermler, U.]]
[[Image:Consurf_key_small.gif|200px|right]]
[[Category: Kroneck, P M.H.]]
Check<jmol>
[[Category: Steinbach, A K.]]
  <jmolCheckbox>
[[Category: Warkentin, E.]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pg/2pgo_consurf.spt"</scriptWhenChecked>
[[Category: Hydrolase]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Three alpha/beta domain]]
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2pgo ConSurf].
<div style="clear:both"></div>
__TOC__
</StructureSection>
[[Category: Aromatoleum diolicum]]
[[Category: Large Structures]]
[[Category: Ermler U]]
[[Category: Kroneck PMH]]
[[Category: Steinbach AK]]
[[Category: Warkentin E]]

Latest revision as of 12:09, 21 February 2024

The crystal structure of FAD and ThDP dependent Cyclohexane-1,2-dione Hydrolase (Cdh) from Azoarcus sp. strain 22LinThe crystal structure of FAD and ThDP dependent Cyclohexane-1,2-dione Hydrolase (Cdh) from Azoarcus sp. strain 22Lin

Structural highlights

2pgo is a 2 chain structure with sequence from Aromatoleum diolicum. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.26Å
Ligands:, , , , ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

2pgo, resolution 1.26Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA