2km4: Difference between revisions

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[[Image:2km4.png|left|200px]]


{{STRUCTURE_2km4|  PDB=2km4  |  SCENE=  }}
==Solution structure of Rtt103 CTD interacting domain==
 
<StructureSection load='2km4' size='340' side='right'caption='[[2km4]]' scene=''>
===Solution structure of Rtt103 CTD interacting domain===
== Structural highlights ==
 
<table><tr><td colspan='2'>[[2km4]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KM4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2KM4 FirstGlance]. <br>
{{ABSTRACT_PUBMED_20818393}}
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
 
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2km4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2km4 OCA], [https://pdbe.org/2km4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2km4 RCSB], [https://www.ebi.ac.uk/pdbsum/2km4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2km4 ProSAT]</span></td></tr>
==About this Structure==
</table>
[[2km4]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KM4 OCA].  
== Function ==
 
[https://www.uniprot.org/uniprot/RT103_YEAST RT103_YEAST] Involved in transcription termination by RNA polymerase II and in regulation of Ty1 transposition.<ref>PMID:11779788</ref> <ref>PMID:15565157</ref>
==Reference==
== Evolutionary Conservation ==
<ref group="xtra">PMID:020818393</ref><references group="xtra"/>
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/km/2km4_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2km4 ConSurf].
<div style="clear:both"></div>
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Saccharomyces cerevisiae]]
[[Category: Saccharomyces cerevisiae]]
[[Category: Becker, R.]]
[[Category: Becker R]]
[[Category: Buratowski, S.]]
[[Category: Buratowski S]]
[[Category: Kim, M.]]
[[Category: Kim M]]
[[Category: Leeper, T C.]]
[[Category: Leeper TC]]
[[Category: Lunde, B M.]]
[[Category: Lunde BM]]
[[Category: Meinhart, A.]]
[[Category: Meinhart A]]
[[Category: Reichow, S.]]
[[Category: Reichow S]]
[[Category: Varani, G.]]
[[Category: Varani G]]
[[Category: Ctd-interacting domain]]
[[Category: Dna-binding]]
[[Category: Nucleus]]
[[Category: Phosphoprotein]]
[[Category: Rna polymerase ii binding protein]]
[[Category: Transcription]]
[[Category: Transcription regulation]]
[[Category: Transcription regulator]]
[[Category: Transcription termination]]

Latest revision as of 09:46, 1 May 2024

Solution structure of Rtt103 CTD interacting domainSolution structure of Rtt103 CTD interacting domain

Structural highlights

2km4 is a 1 chain structure with sequence from Saccharomyces cerevisiae. Full experimental information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:Solution NMR
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

RT103_YEAST Involved in transcription termination by RNA polymerase II and in regulation of Ty1 transposition.[1] [2]

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

References

  1. Scholes DT, Banerjee M, Bowen B, Curcio MJ. Multiple regulators of Ty1 transposition in Saccharomyces cerevisiae have conserved roles in genome maintenance. Genetics. 2001 Dec;159(4):1449-65. PMID:11779788
  2. Kim M, Krogan NJ, Vasiljeva L, Rando OJ, Nedea E, Greenblatt JF, Buratowski S. The yeast Rat1 exonuclease promotes transcription termination by RNA polymerase II. Nature. 2004 Nov 25;432(7016):517-22. PMID:15565157 doi:http://dx.doi.org/nature03041
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