2plr: Difference between revisions

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[[Image:2plr.png|left|200px]]


{{STRUCTURE_2plr| PDB=2plr | SCENE= }}
==Crystal structure of dTMP kinase (st1543) from Sulfolobus Tokodaii Strain7==
<StructureSection load='2plr' size='340' side='right'caption='[[2plr]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[2plr]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Sulfurisphaera_tokodaii_str._7 Sulfurisphaera tokodaii str. 7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PLR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PLR FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1PE:PENTAETHYLENE+GLYCOL'>1PE</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=DTT:2,3-DIHYDROXY-1,4-DITHIOBUTANE'>DTT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2plr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2plr OCA], [https://pdbe.org/2plr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2plr RCSB], [https://www.ebi.ac.uk/pdbsum/2plr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2plr ProSAT], [https://www.topsan.org/Proteins/RSGI/2plr TOPSAN]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/KTHY2_SULTO KTHY2_SULTO]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pl/2plr_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2plr ConSurf].
<div style="clear:both"></div>


===Crystal structure of dTMP kinase (st1543) from Sulfolobus Tokodaii Strain7===
==See Also==
 
*[[Thymidylate kinase 3D structures|Thymidylate kinase 3D structures]]
 
__TOC__
==About this Structure==
</StructureSection>
[[2plr]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Sulfolobus_tokodaii Sulfolobus tokodaii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PLR OCA].
[[Category: Large Structures]]
[[Category: Sulfolobus tokodaii]]
[[Category: Sulfurisphaera tokodaii str. 7]]
[[Category: DTMP kinase]]
[[Category: Ebihara A]]
[[Category: Ebihara, A.]]
[[Category: Jeyakanthan J]]
[[Category: Jeyakanthan, J.]]
[[Category: Kanaujia SP]]
[[Category: Kanaujia, S P.]]
[[Category: Kuramitsu S]]
[[Category: Kuramitsu, S.]]
[[Category: Nakagawa N]]
[[Category: Nakagawa, N.]]
[[Category: Rafi ZA]]
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
[[Category: Sekar K]]
[[Category: Rafi, Z A.]]
[[Category: Shinkai A]]
[[Category: Sekar, K.]]
[[Category: Shiro Y]]
[[Category: Shinkai, A.]]
[[Category: Yokoyama S]]
[[Category: Shiro, Y.]]
[[Category: Yokoyama, S.]]
[[Category: Atp-binding]]
[[Category: National project on protein structural and functional analyse]]
[[Category: Nppsfa]]
[[Category: Riken structural genomics/proteomics initiative]]
[[Category: Rsgi]]
[[Category: Structural genomic]]
[[Category: Thymidylate kinase]]
[[Category: Tmp-binding]]
[[Category: Transferase]]

Latest revision as of 04:19, 21 November 2024

Crystal structure of dTMP kinase (st1543) from Sulfolobus Tokodaii Strain7Crystal structure of dTMP kinase (st1543) from Sulfolobus Tokodaii Strain7

Structural highlights

2plr is a 2 chain structure with sequence from Sulfurisphaera tokodaii str. 7. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.6Å
Ligands:, , , , , , , , ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

KTHY2_SULTO

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

2plr, resolution 1.60Å

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OCA
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