2dnx: Difference between revisions

From Proteopedia
Jump to navigation Jump to search
No edit summary
No edit summary
 
(7 intermediate revisions by the same user not shown)
Line 1: Line 1:
[[Image:2dnx.png|left|200px]]


{{STRUCTURE_2dnx| PDB=2dnx | SCENE= }}
==Solution structure of RSGI RUH-063, an N-terminal domain of Syntaxin 12 from human cDNA==
<StructureSection load='2dnx' size='340' side='right'caption='[[2dnx]]' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[2dnx]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DNX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DNX FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dnx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dnx OCA], [https://pdbe.org/2dnx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dnx RCSB], [https://www.ebi.ac.uk/pdbsum/2dnx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dnx ProSAT], [https://www.topsan.org/Proteins/RSGI/2dnx TOPSAN]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/STX12_HUMAN STX12_HUMAN] SNARE that acts to regulate protein transport between late endosomes and the trans-Golgi network. The SNARE complex containing STX6, STX12, VAMP4 and VTI1A mediates vesicle fusion (in vitro) (By similarity).
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dn/2dnx_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dnx ConSurf].
<div style="clear:both"></div>


===Solution structure of RSGI RUH-063, an N-terminal domain of Syntaxin 12 from human cDNA===
==See Also==
 
*[[Syntaxin 3D structures|Syntaxin 3D structures]]
 
__TOC__
==About this Structure==
</StructureSection>
[[2dnx]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DNX OCA].
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
[[Category: Abe, T.]]
[[Category: Large Structures]]
[[Category: Hirota, H.]]
[[Category: Abe T]]
[[Category: Muto, Y.]]
[[Category: Hirota H]]
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
[[Category: Muto Y]]
[[Category: Yokoyama, S.]]
[[Category: Yokoyama S]]
[[Category: Habc domain]]
[[Category: Left-handed twist]]
[[Category: Membrane fusion]]
[[Category: National project on protein structural and functional analyse]]
[[Category: Nppsfa]]
[[Category: Riken structural genomics/proteomics initiative]]
[[Category: Rsgi]]
[[Category: Snare]]
[[Category: Structural genomic]]
[[Category: Syntaxin]]
[[Category: Transport protein]]
[[Category: Up and down three helix bundle]]
[[Category: Vesicle transport]]

Latest revision as of 21:45, 29 May 2024

Solution structure of RSGI RUH-063, an N-terminal domain of Syntaxin 12 from human cDNASolution structure of RSGI RUH-063, an N-terminal domain of Syntaxin 12 from human cDNA

Structural highlights

2dnx is a 1 chain structure with sequence from Homo sapiens. Full experimental information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:Solution NMR
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

STX12_HUMAN SNARE that acts to regulate protein transport between late endosomes and the trans-Golgi network. The SNARE complex containing STX6, STX12, VAMP4 and VTI1A mediates vesicle fusion (in vitro) (By similarity).

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA