3bvf: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-[[Image:3bvf.png|left|200px]]
-{{STRUCTURE_3bvf|  PDB=3bvf  |  SCENE=  }}
+==Structural basis for the iron uptake mechanism of Helicobacter pylori ferritin==
+<StructureSection load='3bvf' size='340' side='right'caption='[[3bvf]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
-===Structural basis for the iron uptake mechanism of Helicobacter pylori ferritin===
+== Structural highlights ==
+<table><tr><td colspan='2'>[[3bvf]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Helicobacter_pylori Helicobacter pylori]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BVF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BVF FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
-==About this Structure==
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=IPA:ISOPROPYL+ALCOHOL'>IPA</scene></td></tr>
-[[3bvf]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Helicobacter_pylori Helicobacter pylori]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BVF OCA].
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bvf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bvf OCA], [https://pdbe.org/3bvf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bvf RCSB], [https://www.ebi.ac.uk/pdbsum/3bvf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bvf ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/FTN_HELPJ FTN_HELPJ] Iron-storage protein (By similarity).
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bv/3bvf_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3bvf ConSurf].
+<div style="clear:both"></div>
 ==See Also==
-*[[Ferritin|Ferritin]]
+*[[Ferritin 3D structures|Ferritin 3D structures]]
-[[Category: Ferroxidase]]
+__TOC__
+</StructureSection>
 [[Category: Helicobacter pylori]]
-[[Category: Cho, K J.]]
+[[Category: Large Structures]]
-[[Category: Kim, K H.]]
+[[Category: Cho KJ]]
-[[Category: Lee, J H.]]
+[[Category: Kim KH]]
-[[Category: Shin, H J.]]
+[[Category: Lee JH]]
-[[Category: Yang, I S.]]
+[[Category: Shin HJ]]
-[[Category: Iron storage]]
+[[Category: Yang IS]]
-[[Category: Metal-binding]]
-[[Category: Oxidoreductase]]